Cluster: A49.bin_13_CGC43
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: A49.bin_13
- CGC Family ID: CGCFAM_00054
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A49_contig_3606 | A49_contig_3606_61 | 68876 | 70282 | + | 2.A.66.1.32 |
| STP | A49_contig_3606 | A49_contig_3606_62 | 70485 | 71054 | + | TetR_N |
| CAZyme | A49_contig_3606 | A49_contig_3606_63 | 71051 | 73423 | + | GH2 |
| TC | A49_contig_3606 | A49_contig_3606_64 | 73414 | 74799 | + | 2.A.2.1.1 |
| CAZyme | A49_contig_3606 | A49_contig_3606_65 | 74792 | 76381 | + | GH36 |
| TC | A49_contig_3606 | A49_contig_3606_66 | 76544 | 77938 | + | 2.A.40.2.1 |
Gene ID: A49_contig_3606_61
Type: TC
Location: 68876 - 70282 (+)
Type: TC
Location: 68876 - 70282 (+)
Gene ID: A49_contig_3606_62
Type: STP
Location: 70485 - 71054 (+)
Type: STP
Location: 70485 - 71054 (+)
Gene ID: A49_contig_3606_63
Type: CAZyme
Location: 71051 - 73423 (+)
Type: CAZyme
Location: 71051 - 73423 (+)
Gene ID: A49_contig_3606_64
Type: TC
Location: 73414 - 74799 (+)
Type: TC
Location: 73414 - 74799 (+)
Gene ID: A49_contig_3606_65
Type: CAZyme
Location: 74792 - 76381 (+)
Type: CAZyme
Location: 74792 - 76381 (+)
Gene ID: A49_contig_3606_66
Type: TC
Location: 76544 - 77938 (+)
Type: TC
Location: 76544 - 77938 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.