Cluster: A49.bin_13_CGC18
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: A49.bin_13
- CGC Family ID: CGCFAM_00041
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A49_contig_140 | A49_contig_140_1222 | 1380847 | 1382238 | + | 3.A.1.1.11 |
| TC | A49_contig_140 | A49_contig_140_1223 | 1382358 | 1383269 | + | 3.A.1.1.11 |
| TC | A49_contig_140 | A49_contig_140_1224 | 1383283 | 1384143 | + | 3.A.1.1.11 |
| TF | A49_contig_140 | A49_contig_140_1225 | 1384461 | 1385324 | - | HTH_AraC | HTH_AraC |
| CAZyme | A49_contig_140 | A49_contig_140_1226 | 1385455 | 1387008 | + | GH28 |
| CAZyme | A49_contig_140 | A49_contig_140_1227 | 1387012 | 1388163 | + | GH105 |
| pfam | A49_contig_140 | A49_contig_140_1228 | 1388176 | 1389006 | + | AP_endonuc_2 |
| CAZyme | A49_contig_140 | A49_contig_140_1229 | 1389003 | 1389977 | + | CE8 |
| STP | A49_contig_140 | A49_contig_140_1230 | 1390042 | 1390920 | - | SBP_bac_3 |
| TC | A49_contig_140 | A49_contig_140_1231 | 1391150 | 1391899 | - | 3.A.1.3.9 |
| TC | A49_contig_140 | A49_contig_140_1232 | 1391906 | 1392580 | - | 3.A.1.3.16 |
| TC | A49_contig_140 | A49_contig_140_1233 | 1392561 | 1393220 | - | 3.A.1.3.10 |
Gene ID: A49_contig_140_1222
Type: TC
Location: 1380847 - 1382238 (+)
Type: TC
Location: 1380847 - 1382238 (+)
Gene ID: A49_contig_140_1223
Type: TC
Location: 1382358 - 1383269 (+)
Type: TC
Location: 1382358 - 1383269 (+)
Gene ID: A49_contig_140_1224
Type: TC
Location: 1383283 - 1384143 (+)
Type: TC
Location: 1383283 - 1384143 (+)
Gene ID: A49_contig_140_1225
Type: TF
Location: 1384461 - 1385324 (-)
Type: TF
Location: 1384461 - 1385324 (-)
Gene ID: A49_contig_140_1226
Type: CAZyme
Location: 1385455 - 1387008 (+)
Type: CAZyme
Location: 1385455 - 1387008 (+)
Gene ID: A49_contig_140_1227
Type: CAZyme
Location: 1387012 - 1388163 (+)
Type: CAZyme
Location: 1387012 - 1388163 (+)
Gene ID: A49_contig_140_1228
Type: pfam
Location: 1388176 - 1389006 (+)
Type: pfam
Location: 1388176 - 1389006 (+)
Gene ID: A49_contig_140_1229
Type: CAZyme
Location: 1389003 - 1389977 (+)
Type: CAZyme
Location: 1389003 - 1389977 (+)
Gene ID: A49_contig_140_1230
Type: STP
Location: 1390042 - 1390920 (-)
Type: STP
Location: 1390042 - 1390920 (-)
Gene ID: A49_contig_140_1231
Type: TC
Location: 1391150 - 1391899 (-)
Type: TC
Location: 1391150 - 1391899 (-)
Gene ID: A49_contig_140_1232
Type: TC
Location: 1391906 - 1392580 (-)
Type: TC
Location: 1391906 - 1392580 (-)
Gene ID: A49_contig_140_1233
Type: TC
Location: 1392561 - 1393220 (-)
Type: TC
Location: 1392561 - 1393220 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.