Cluster: A49.bin_13_CGC39
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 8
- Substrate:
- Genome ID: A49.bin_13
- CGC Family ID: CGCFAM_00381
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A49_contig_140 | A49_contig_140_2451 | 2876121 | 2877182 | - | GT2 |
| CAZyme | A49_contig_140 | A49_contig_140_2452 | 2877179 | 2878402 | - | GT4 |
| CAZyme | A49_contig_140 | A49_contig_140_2453 | 2878548 | 2879525 | - | GT2 |
| CAZyme | A49_contig_140 | A49_contig_140_2454 | 2879529 | 2880545 | - | GT2 |
| CAZyme | A49_contig_140 | A49_contig_140_2455 | 2880666 | 2881658 | - | GT2 |
| CAZyme | A49_contig_140 | A49_contig_140_2456 | 2881655 | 2882920 | - | GT4 |
| NULL(UNKNOWN) | A49_contig_140 | A49_contig_140_2457 | 2883118 | 2884338 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A49_contig_140 | A49_contig_140_2458 | 2884338 | 2885327 | - | GT2 |
| CAZyme | A49_contig_140 | A49_contig_140_2459 | 2885324 | 2886439 | - | GT4 |
| NULL(UNKNOWN) | A49_contig_140 | A49_contig_140_2460 | 2886439 | 2886594 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | A49_contig_140 | A49_contig_140_2461 | 2886737 | 2886892 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A49_contig_140 | A49_contig_140_2462 | 2886941 | 2889313 | - | 9.A.8.1.6 |
Gene ID: A49_contig_140_2451
Type: CAZyme
Location: 2876121 - 2877182 (-)
Type: CAZyme
Location: 2876121 - 2877182 (-)
Gene ID: A49_contig_140_2452
Type: CAZyme
Location: 2877179 - 2878402 (-)
Type: CAZyme
Location: 2877179 - 2878402 (-)
Gene ID: A49_contig_140_2453
Type: CAZyme
Location: 2878548 - 2879525 (-)
Type: CAZyme
Location: 2878548 - 2879525 (-)
Gene ID: A49_contig_140_2454
Type: CAZyme
Location: 2879529 - 2880545 (-)
Type: CAZyme
Location: 2879529 - 2880545 (-)
Gene ID: A49_contig_140_2455
Type: CAZyme
Location: 2880666 - 2881658 (-)
Type: CAZyme
Location: 2880666 - 2881658 (-)
Gene ID: A49_contig_140_2456
Type: CAZyme
Location: 2881655 - 2882920 (-)
Type: CAZyme
Location: 2881655 - 2882920 (-)
Gene ID: A49_contig_140_2457
Type:
Location: 2883118 - 2884338 (-)
Type:
Location: 2883118 - 2884338 (-)
Gene ID: A49_contig_140_2458
Type: CAZyme
Location: 2884338 - 2885327 (-)
Type: CAZyme
Location: 2884338 - 2885327 (-)
Gene ID: A49_contig_140_2459
Type: CAZyme
Location: 2885324 - 2886439 (-)
Type: CAZyme
Location: 2885324 - 2886439 (-)
Gene ID: A49_contig_140_2460
Type:
Location: 2886439 - 2886594 (-)
Type:
Location: 2886439 - 2886594 (-)
Gene ID: A49_contig_140_2461
Type:
Location: 2886737 - 2886892 (-)
Type:
Location: 2886737 - 2886892 (-)
Gene ID: A49_contig_140_2462
Type: TC
Location: 2886941 - 2889313 (-)
Type: TC
Location: 2886941 - 2889313 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.