Cluster: A49.bin_13_CGC38
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: A49.bin_13
- CGC Family ID: CGCFAM_00047
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A49_contig_140 | A49_contig_140_2346 | 2764662 | 2767097 | - | GH94 |
| TF | A49_contig_140 | A49_contig_140_2347 | 2767568 | 2768584 | + | LacI |
| NULL(UNKNOWN) | A49_contig_140 | A49_contig_140_2348 | 2768661 | 2770118 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A49_contig_140 | A49_contig_140_2349 | 2770374 | 2771351 | + | 3.A.1.1.4 |
| TC | A49_contig_140 | A49_contig_140_2350 | 2771370 | 2772263 | + | 3.A.1.1.48 |
| CAZyme | A49_contig_140 | A49_contig_140_2351 | 2772356 | 2773711 | + | GH1 |
Gene ID: A49_contig_140_2346
Type: CAZyme
Location: 2764662 - 2767097 (-)
Type: CAZyme
Location: 2764662 - 2767097 (-)
Gene ID: A49_contig_140_2347
Type: TF
Location: 2767568 - 2768584 (+)
Type: TF
Location: 2767568 - 2768584 (+)
Gene ID: A49_contig_140_2348
Type:
Location: 2768661 - 2770118 (+)
Type:
Location: 2768661 - 2770118 (+)
Gene ID: A49_contig_140_2349
Type: TC
Location: 2770374 - 2771351 (+)
Type: TC
Location: 2770374 - 2771351 (+)
Gene ID: A49_contig_140_2350
Type: TC
Location: 2771370 - 2772263 (+)
Type: TC
Location: 2771370 - 2772263 (+)
Gene ID: A49_contig_140_2351
Type: CAZyme
Location: 2772356 - 2773711 (+)
Type: CAZyme
Location: 2772356 - 2773711 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.