Cluster: A49.bin_13_CGC29
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: A49.bin_13
- CGC Family ID: CGCFAM_00990
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A49_contig_140 | A49_contig_140_1854 | 2163795 | 2166545 | + | GH3 |
| TF | A49_contig_140 | A49_contig_140_1855 | 2166583 | 2168844 | + | HTH_AraC | HTH_AraC |
| TC | A49_contig_140 | A49_contig_140_1856 | 2169189 | 2170838 | + | 3.A.1.1.10 |
| TC | A49_contig_140 | A49_contig_140_1857 | 2170917 | 2171882 | + | 3.A.1.1.10 |
| TC | A49_contig_140 | A49_contig_140_1858 | 2171895 | 2172794 | + | 3.A.1.1.10 |
| CAZyme | A49_contig_140 | A49_contig_140_1859 | 2172807 | 2173949 | + | GH88 |
| CAZyme | A49_contig_140 | A49_contig_140_1860 | 2174007 | 2175917 | + | GH154 |
| CAZyme | A49_contig_140 | A49_contig_140_1861 | 2175921 | 2177675 | + | PL37 |
| NULL(UNKNOWN) | A49_contig_140 | A49_contig_140_1862 | 2177672 | 2178457 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | A49_contig_140 | A49_contig_140_1863 | 2179904 | 2181340 | - | Phage_integrase | Phage_int_SAM_5 | Phage_int_SAM_3 |
| CAZyme | A49_contig_140 | A49_contig_140_1864 | 2182155 | 2183237 | + | CE1 |
| CAZyme | A49_contig_140 | A49_contig_140_1865 | 2183252 | 2186332 | + | GH3 |
Gene ID: A49_contig_140_1854
Type: CAZyme
Location: 2163795 - 2166545 (+)
Type: CAZyme
Location: 2163795 - 2166545 (+)
Gene ID: A49_contig_140_1855
Type: TF
Location: 2166583 - 2168844 (+)
Type: TF
Location: 2166583 - 2168844 (+)
Gene ID: A49_contig_140_1856
Type: TC
Location: 2169189 - 2170838 (+)
Type: TC
Location: 2169189 - 2170838 (+)
Gene ID: A49_contig_140_1857
Type: TC
Location: 2170917 - 2171882 (+)
Type: TC
Location: 2170917 - 2171882 (+)
Gene ID: A49_contig_140_1858
Type: TC
Location: 2171895 - 2172794 (+)
Type: TC
Location: 2171895 - 2172794 (+)
Gene ID: A49_contig_140_1859
Type: CAZyme
Location: 2172807 - 2173949 (+)
Type: CAZyme
Location: 2172807 - 2173949 (+)
Gene ID: A49_contig_140_1860
Type: CAZyme
Location: 2174007 - 2175917 (+)
Type: CAZyme
Location: 2174007 - 2175917 (+)
Gene ID: A49_contig_140_1861
Type: CAZyme
Location: 2175921 - 2177675 (+)
Type: CAZyme
Location: 2175921 - 2177675 (+)
Gene ID: A49_contig_140_1862
Type:
Location: 2177672 - 2178457 (+)
Type:
Location: 2177672 - 2178457 (+)
Gene ID: A49_contig_140_1863
Type: pfam
Location: 2179904 - 2181340 (-)
Type: pfam
Location: 2179904 - 2181340 (-)
Gene ID: A49_contig_140_1864
Type: CAZyme
Location: 2182155 - 2183237 (+)
Type: CAZyme
Location: 2182155 - 2183237 (+)
Gene ID: A49_contig_140_1865
Type: CAZyme
Location: 2183252 - 2186332 (+)
Type: CAZyme
Location: 2183252 - 2186332 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A49_contig_140_1854 | vegan > omnivore | 1.42952 | 0.00699 |
| A49_contig_140_1854 | vegetarian > omnivore | 1.21459 | 0.00567 |
| A49_contig_140_1855 | vegan > omnivore | 1.96925 | 0.00699 |
| A49_contig_140_1855 | vegetarian > omnivore | 2.65436 | 0.00567 |
| A49_contig_140_1856 | vegetarian > omnivore | 2.55100 | 0.00567 |
| A49_contig_140_1856 | vegan > omnivore | 1.94137 | 0.00699 |
| A49_contig_140_1857 | vegetarian > omnivore | 2.98099 | 0.00567 |
| A49_contig_140_1857 | vegan > omnivore | 2.66641 | 0.00699 |
| A49_contig_140_1858 | vegan > omnivore | 2.49024 | 0.00699 |
| A49_contig_140_1858 | vegetarian > omnivore | 3.07697 | 0.00567 |
| A49_contig_140_1859 | vegetarian > omnivore | 2.16958 | 0.00567 |
| A49_contig_140_1859 | vegan > omnivore | 1.43363 | 0.00699 |
| A49_contig_140_1860 | vegetarian > omnivore | 2.65502 | 0.00567 |
| A49_contig_140_1860 | vegan > omnivore | 1.99740 | 0.00699 |
| A49_contig_140_1861 | vegetarian > omnivore | 2.82508 | 0.00567 |
| A49_contig_140_1861 | vegan > omnivore | 2.11842 | 0.00699 |
| A49_contig_140_1862 | vegetarian > omnivore | 2.98745 | 0.00567 |
| A49_contig_140_1862 | vegan > omnivore | 2.55414 | 0.00699 |