Genome Details
Selected Rep_genome_ID: HRGMv2_1813
Total Genomes Found: 2
Total Genomes Found: 2
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_1813 | 5,292,178 | 99.93% | 0.446% | UK | Europe | HRGM |
| Rep_1003 | 5,062,001 | 99.784% | 0.446429% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_1813_CGC25 | CGCFAM_00038 | Yes | 4 | 3 | |
| HRGMv2_1813_CGC19 | CGCFAM_00123 | Yes | 12 | 4 | |
| HRGMv2_1813_CGC23 | CGCFAM_00144 | Yes | 9 | 2 | |
| HRGMv2_1813_CGC47 | CGCFAM_00299 | Yes | 3 | 1 | beta-glucan |
| HRGMv2_1813_CGC43 | CGCFAM_00399 | Yes | 7 | 2 | |
| HRGMv2_1813_CGC48 | CGCFAM_00433 | Yes | 7 | 2 | |
| HRGMv2_1813_CGC50 | CGCFAM_00508 | Yes | 6 | 1 | |
| HRGMv2_1813_CGC30 | CGCFAM_00626 | Yes | 5 | 1 | |
| HRGMv2_1813_CGC11 | CGCFAM_03292 | Yes | 6 | 1 | |
| HRGMv2_1813_CGC28 | CGCFAM_03484 | Yes | 9 | 2 | |
| HRGMv2_1813_CGC40 | CGCFAM_03485 | Yes | 10 | 3 | |
| HRGMv2_1813_CGC44 | CGCFAM_03874 | Yes | 6 | 1 | |
| HRGMv2_1813_CGC42 | CGCFAM_03875 | Yes | 30 | 5 | |
| HRGMv2_1813_CGC6 | CGCFAM_05692 | Yes | 20 | 1 | |
| HRGMv2_1813_CGC46 | CGCFAM_05694 | Yes | 9 | 1 | |
| HRGMv2_1813_CGC8 | CGCFAM_05695 | Yes | 7 | 1 | |
| HRGMv2_1813_CGC4 | CGCFAM_06065 | Yes | 13 | 1 | |
| PUL0531_HRGMv2_1813_C1 | CGCFAM_06453 | Yes | 4 | 1 | chitin |
| HRGMv2_1813_CGC53 | CGCFAM_07451 | Yes | 11 | 2 | |
| HRGMv2_1813_CGC24 | CGCFAM_08801 | Yes | 4 | 2 | |
| HRGMv2_1813_CGC33 | CGCFAM_08805 | Yes | 5 | 1 | |
| HRGMv2_1813_CGC49 | CGCFAM_09870 | Yes | 4 | 1 |
Top CAZyme Families