Cluster: HRGMv2_1813_CGC47
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate: beta-glucan
- Genome ID: HRGMv2_1813
- CGC Family ID: CGCFAM_00299
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1813_22 | HRGMv2_1813_22_34 | 43671 | 45065 | - | 1.B.19.1.1 |
| CAZyme | HRGMv2_1813_22 | HRGMv2_1813_22_35 | 45194 | 46597 | - | GH1 |
| TC | HRGMv2_1813_22 | HRGMv2_1813_22_36 | 46612 | 48492 | - | 4.A.1.2.2 |
Gene ID: HRGMv2_1813_22_34
Type: TC
Location: 43671 - 45065 (-)
Type: TC
Location: 43671 - 45065 (-)
Gene ID: HRGMv2_1813_22_35
Type: CAZyme
Location: 45194 - 46597 (-)
Type: CAZyme
Location: 45194 - 46597 (-)
Gene ID: HRGMv2_1813_22_36
Type: TC
Location: 46612 - 48492 (-)
Type: TC
Location: 46612 - 48492 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.