Cluster: HRGMv2_1813_CGC19
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_1813
- CGC Family ID: CGCFAM_00123
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1813_8 | HRGMv2_1813_8_90 | 91142 | 91978 | + | 9.B.104.1.1 |
| TF | HRGMv2_1813_8 | HRGMv2_1813_8_91 | 92015 | 92773 | + | HTH_DeoR |
| pfam | HRGMv2_1813_8 | HRGMv2_1813_8_92 | 93040 | 94548 | + | DAO | DAO_C |
| CAZyme | HRGMv2_1813_8 | HRGMv2_1813_8_93 | 94593 | 97040 | - | GT35 |
| CAZyme | HRGMv2_1813_8 | HRGMv2_1813_8_94 | 97313 | 98746 | - | GT5 |
| pfam | HRGMv2_1813_8 | HRGMv2_1813_8_95 | 99077 | 100354 | - | NTP_transferase | NTP_transf_3 | Hexapep_GlmU |
| CAZyme | HRGMv2_1813_8 | HRGMv2_1813_8_96 | 100367 | 102352 | - | GH13_11 |
| CAZyme | HRGMv2_1813_8 | HRGMv2_1813_8_97 | 102349 | 104535 | - | CBM48 | GH13_9 |
| pfam | HRGMv2_1813_8 | HRGMv2_1813_8_98 | 105032 | 106135 | - | Semialdhyde_dh | Semialdhyde_dhC |
| TC | HRGMv2_1813_8 | HRGMv2_1813_8_99 | 106349 | 106942 | + | 2.A.95.1.5 |
| STP | HRGMv2_1813_8 | HRGMv2_1813_8_100 | 106991 | 107518 | - | SKI |
| TC | HRGMv2_1813_8 | HRGMv2_1813_8_101 | 107704 | 109020 | - | 2.A.8.1.4 |
Gene ID: HRGMv2_1813_8_90
Type: TC
Location: 91142 - 91978 (+)
Type: TC
Location: 91142 - 91978 (+)
Gene ID: HRGMv2_1813_8_91
Type: TF
Location: 92015 - 92773 (+)
Type: TF
Location: 92015 - 92773 (+)
Gene ID: HRGMv2_1813_8_92
Type: pfam
Location: 93040 - 94548 (+)
Type: pfam
Location: 93040 - 94548 (+)
Gene ID: HRGMv2_1813_8_93
Type: CAZyme
Location: 94593 - 97040 (-)
Type: CAZyme
Location: 94593 - 97040 (-)
Gene ID: HRGMv2_1813_8_94
Type: CAZyme
Location: 97313 - 98746 (-)
Type: CAZyme
Location: 97313 - 98746 (-)
Gene ID: HRGMv2_1813_8_95
Type: pfam
Location: 99077 - 100354 (-)
Type: pfam
Location: 99077 - 100354 (-)
Gene ID: HRGMv2_1813_8_96
Type: CAZyme
Location: 100367 - 102352 (-)
Type: CAZyme
Location: 100367 - 102352 (-)
Gene ID: HRGMv2_1813_8_97
Type: CAZyme
Location: 102349 - 104535 (-)
Type: CAZyme
Location: 102349 - 104535 (-)
Gene ID: HRGMv2_1813_8_98
Type: pfam
Location: 105032 - 106135 (-)
Type: pfam
Location: 105032 - 106135 (-)
Gene ID: HRGMv2_1813_8_99
Type: TC
Location: 106349 - 106942 (+)
Type: TC
Location: 106349 - 106942 (+)
Gene ID: HRGMv2_1813_8_100
Type: STP
Location: 106991 - 107518 (-)
Type: STP
Location: 106991 - 107518 (-)
Gene ID: HRGMv2_1813_8_101
Type: TC
Location: 107704 - 109020 (-)
Type: TC
Location: 107704 - 109020 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.