Cluster: HRGMv2_1813_CGC49
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1813
- CGC Family ID: CGCFAM_09870
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1813_24 | HRGMv2_1813_24_57 | 56329 | 57039 | + | GT20 |
| TC | HRGMv2_1813_24 | HRGMv2_1813_24_58 | 57404 | 59584 | + | 2.A.114.1.10 |
| pfam | HRGMv2_1813_24 | HRGMv2_1813_24_59 | 59652 | 59855 | + | Sel_put |
| TC | HRGMv2_1813_24 | HRGMv2_1813_24_60 | 59868 | 60830 | + | 9.B.10.1.1 |
Gene ID: HRGMv2_1813_24_57
Type: CAZyme
Location: 56329 - 57039 (+)
Type: CAZyme
Location: 56329 - 57039 (+)
Gene ID: HRGMv2_1813_24_58
Type: TC
Location: 57404 - 59584 (+)
Type: TC
Location: 57404 - 59584 (+)
Gene ID: HRGMv2_1813_24_59
Type: pfam
Location: 59652 - 59855 (+)
Type: pfam
Location: 59652 - 59855 (+)
Gene ID: HRGMv2_1813_24_60
Type: TC
Location: 59868 - 60830 (+)
Type: TC
Location: 59868 - 60830 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.