Cluster: HRGMv2_1813_CGC30
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1813
- CGC Family ID: CGCFAM_00626
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1813_12 | HRGMv2_1813_12_138 | 153426 | 155660 | + | 1.B.14.9.3 |
| CAZyme | HRGMv2_1813_12 | HRGMv2_1813_12_139 | 155721 | 156659 | - | CE4 |
| pfam | HRGMv2_1813_12 | HRGMv2_1813_12_140 | 156679 | 157422 | - | Asp_Glu_race |
| TF | HRGMv2_1813_12 | HRGMv2_1813_12_141 | 157419 | 158168 | - | GntR |
| TC | HRGMv2_1813_12 | HRGMv2_1813_12_142 | 158334 | 159794 | + | 2.A.39.3.4 |
Gene ID: HRGMv2_1813_12_138
Type: TC
Location: 153426 - 155660 (+)
Type: TC
Location: 153426 - 155660 (+)
Gene ID: HRGMv2_1813_12_139
Type: CAZyme
Location: 155721 - 156659 (-)
Type: CAZyme
Location: 155721 - 156659 (-)
Gene ID: HRGMv2_1813_12_140
Type: pfam
Location: 156679 - 157422 (-)
Type: pfam
Location: 156679 - 157422 (-)
Gene ID: HRGMv2_1813_12_141
Type: TF
Location: 157419 - 158168 (-)
Type: TF
Location: 157419 - 158168 (-)
Gene ID: HRGMv2_1813_12_142
Type: TC
Location: 158334 - 159794 (+)
Type: TC
Location: 158334 - 159794 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.