Cluster: HRGMv2_1813_CGC6
🧬 Cluster Details
- Gene Count: 20
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1813
- CGC Family ID: CGCFAM_05692
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1813_2 | HRGMv2_1813_2_226 | 240009 | 240671 | - | 9.B.27.2.1 |
| pfam | HRGMv2_1813_2 | HRGMv2_1813_2_227 | 240826 | 242022 | - | Cys_Met_Meta_PP |
| TC | HRGMv2_1813_2 | HRGMv2_1813_2_228 | 242481 | 243455 | + | 1.A.30.2.1 |
| TC | HRGMv2_1813_2 | HRGMv2_1813_2_229 | 243465 | 243881 | + | 1.A.30.2.1 |
| pfam | HRGMv2_1813_2 | HRGMv2_1813_2_230 | 243951 | 244769 | - | Shikimate_dh_N |
| TF | HRGMv2_1813_2 | HRGMv2_1813_2_231 | 244806 | 245849 | - | LacI |
| CAZyme | HRGMv2_1813_2 | HRGMv2_1813_2_232 | 245871 | 247280 | - | GH32 |
| TC | HRGMv2_1813_2 | HRGMv2_1813_2_233 | 247280 | 248650 | - | 4.A.1.2.1 |
| TC | HRGMv2_1813_2 | HRGMv2_1813_2_234 | 248716 | 250125 | - | 1.B.15.1.1 |
| STP | HRGMv2_1813_2 | HRGMv2_1813_2_235 | 250356 | 251285 | - | PfkB |
| TC | HRGMv2_1813_2 | HRGMv2_1813_2_236 | 251866 | 253581 | + | 1.B.20.1.5 |
| pfam | HRGMv2_1813_2 | HRGMv2_1813_2_237 | 253592 | 254122 | + | HlyC |
| TC | HRGMv2_1813_2 | HRGMv2_1813_2_238 | 254133 | 263636 | + | 1.C.75.1.2 |
| NULL(UNKNOWN) | HRGMv2_1813_2 | HRGMv2_1813_2_239 | 263645 | 264082 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_1813_2 | HRGMv2_1813_2_240 | 264187 | 264720 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1813_2 | HRGMv2_1813_2_241 | 264961 | 265536 | + | 1.B.6.2.1 |
| TC | HRGMv2_1813_2 | HRGMv2_1813_2_242 | 265582 | 265896 | - | 2.A.68.1.1 |
| NULL(UNKNOWN) | HRGMv2_1813_2 | HRGMv2_1813_2_243 | 268153 | 268347 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_1813_2 | HRGMv2_1813_2_244 | 269051 | 269365 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1813_2 | HRGMv2_1813_2_245 | 270609 | 272135 | - | 2.A.68.1.1 |
Gene ID: HRGMv2_1813_2_226
Type: TC
Location: 240009 - 240671 (-)
Type: TC
Location: 240009 - 240671 (-)
Gene ID: HRGMv2_1813_2_227
Type: pfam
Location: 240826 - 242022 (-)
Type: pfam
Location: 240826 - 242022 (-)
Gene ID: HRGMv2_1813_2_228
Type: TC
Location: 242481 - 243455 (+)
Type: TC
Location: 242481 - 243455 (+)
Gene ID: HRGMv2_1813_2_229
Type: TC
Location: 243465 - 243881 (+)
Type: TC
Location: 243465 - 243881 (+)
Gene ID: HRGMv2_1813_2_230
Type: pfam
Location: 243951 - 244769 (-)
Type: pfam
Location: 243951 - 244769 (-)
Gene ID: HRGMv2_1813_2_231
Type: TF
Location: 244806 - 245849 (-)
Type: TF
Location: 244806 - 245849 (-)
Gene ID: HRGMv2_1813_2_232
Type: CAZyme
Location: 245871 - 247280 (-)
Type: CAZyme
Location: 245871 - 247280 (-)
Gene ID: HRGMv2_1813_2_233
Type: TC
Location: 247280 - 248650 (-)
Type: TC
Location: 247280 - 248650 (-)
Gene ID: HRGMv2_1813_2_234
Type: TC
Location: 248716 - 250125 (-)
Type: TC
Location: 248716 - 250125 (-)
Gene ID: HRGMv2_1813_2_235
Type: STP
Location: 250356 - 251285 (-)
Type: STP
Location: 250356 - 251285 (-)
Gene ID: HRGMv2_1813_2_236
Type: TC
Location: 251866 - 253581 (+)
Type: TC
Location: 251866 - 253581 (+)
Gene ID: HRGMv2_1813_2_237
Type: pfam
Location: 253592 - 254122 (+)
Type: pfam
Location: 253592 - 254122 (+)
Gene ID: HRGMv2_1813_2_238
Type: TC
Location: 254133 - 263636 (+)
Type: TC
Location: 254133 - 263636 (+)
Gene ID: HRGMv2_1813_2_239
Type:
Location: 263645 - 264082 (+)
Type:
Location: 263645 - 264082 (+)
Gene ID: HRGMv2_1813_2_240
Type:
Location: 264187 - 264720 (+)
Type:
Location: 264187 - 264720 (+)
Gene ID: HRGMv2_1813_2_241
Type: TC
Location: 264961 - 265536 (+)
Type: TC
Location: 264961 - 265536 (+)
Gene ID: HRGMv2_1813_2_242
Type: TC
Location: 265582 - 265896 (-)
Type: TC
Location: 265582 - 265896 (-)
Gene ID: HRGMv2_1813_2_243
Type:
Location: 268153 - 268347 (-)
Type:
Location: 268153 - 268347 (-)
Gene ID: HRGMv2_1813_2_244
Type:
Location: 269051 - 269365 (+)
Type:
Location: 269051 - 269365 (+)
Gene ID: HRGMv2_1813_2_245
Type: TC
Location: 270609 - 272135 (-)
Type: TC
Location: 270609 - 272135 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.