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Cluster: HRGMv2_1813_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1813_2 HRGMv2_1813_2_199 207596 209011 + 1.B.76.1.8
TF HRGMv2_1813_2 HRGMv2_1813_2_200 209030 210004 - HTH_1
pfam HRGMv2_1813_2 HRGMv2_1813_2_201 210078 210899 + PNP_UDP_1
TC HRGMv2_1813_2 HRGMv2_1813_2_202 210981 212240 + 2.A.1.10.2
STP HRGMv2_1813_2 HRGMv2_1813_2_203 212279 213166 - PfkB
pfam HRGMv2_1813_2 HRGMv2_1813_2_204 213349 215514 + Radical_SAM | Radical_SAM_N | DUF3362
CAZyme HRGMv2_1813_2 HRGMv2_1813_2_205 215578 216225 - GH23
pfam HRGMv2_1813_2 HRGMv2_1813_2_206 216222 217424 - ROK
pfam HRGMv2_1813_2 HRGMv2_1813_2_207 217532 220822 + TPR_16 | TPR_16 | TPR_16 | DUF5107
TC HRGMv2_1813_2 HRGMv2_1813_2_208 220842 222263 + 2.A.1.1.3
TC HRGMv2_1813_2 HRGMv2_1813_2_209 222427 223410 + 3.A.1.2.27
TC HRGMv2_1813_2 HRGMv2_1813_2_210 223557 225095 + 3.A.1.2.27
TC HRGMv2_1813_2 HRGMv2_1813_2_211 225131 226111 + 3.A.1.2.27
Gene ID: HRGMv2_1813_2_199
Type: TC
Location: 207596 - 209011 (+)
Gene ID: HRGMv2_1813_2_200
Type: TF
Location: 209030 - 210004 (-)
Gene ID: HRGMv2_1813_2_201
Type: pfam
Location: 210078 - 210899 (+)
Gene ID: HRGMv2_1813_2_202
Type: TC
Location: 210981 - 212240 (+)
Gene ID: HRGMv2_1813_2_203
Type: STP
Location: 212279 - 213166 (-)
Gene ID: HRGMv2_1813_2_204
Type: pfam
Location: 213349 - 215514 (+)
Gene ID: HRGMv2_1813_2_205
Type: CAZyme
Location: 215578 - 216225 (-)
Gene ID: HRGMv2_1813_2_206
Type: pfam
Location: 216222 - 217424 (-)
Gene ID: HRGMv2_1813_2_207
Type: pfam
Location: 217532 - 220822 (+)
Gene ID: HRGMv2_1813_2_208
Type: TC
Location: 220842 - 222263 (+)
Gene ID: HRGMv2_1813_2_209
Type: TC
Location: 222427 - 223410 (+)
Gene ID: HRGMv2_1813_2_210
Type: TC
Location: 223557 - 225095 (+)
Gene ID: HRGMv2_1813_2_211
Type: TC
Location: 225131 - 226111 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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