Cluster: HRGMv2_1813_CGC48
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1813
- CGC Family ID: CGCFAM_00433
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1813_23 | HRGMv2_1813_23_43 | 43258 | 43782 | + | 2.A.37.1.2 |
| CAZyme | HRGMv2_1813_23 | HRGMv2_1813_23_44 | 43812 | 45512 | - | GH13_29 |
| TC | HRGMv2_1813_23 | HRGMv2_1813_23_45 | 45533 | 46948 | - | 4.A.1.2.4 |
| NULL(UNKNOWN) | HRGMv2_1813_23 | HRGMv2_1813_23_46 | 47283 | 47696 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_1813_23 | HRGMv2_1813_23_47 | 47730 | 48677 | - | LacI |
| TC | HRGMv2_1813_23 | HRGMv2_1813_23_48 | 49095 | 51803 | + | 3.A.3.4.1 |
| CAZyme | HRGMv2_1813_23 | HRGMv2_1813_23_49 | 52076 | 54469 | + | GH20 |
Gene ID: HRGMv2_1813_23_43
Type: TC
Location: 43258 - 43782 (+)
Type: TC
Location: 43258 - 43782 (+)
Gene ID: HRGMv2_1813_23_44
Type: CAZyme
Location: 43812 - 45512 (-)
Type: CAZyme
Location: 43812 - 45512 (-)
Gene ID: HRGMv2_1813_23_45
Type: TC
Location: 45533 - 46948 (-)
Type: TC
Location: 45533 - 46948 (-)
Gene ID: HRGMv2_1813_23_46
Type:
Location: 47283 - 47696 (+)
Type:
Location: 47283 - 47696 (+)
Gene ID: HRGMv2_1813_23_47
Type: TF
Location: 47730 - 48677 (-)
Type: TF
Location: 47730 - 48677 (-)
Gene ID: HRGMv2_1813_23_48
Type: TC
Location: 49095 - 51803 (+)
Type: TC
Location: 49095 - 51803 (+)
Gene ID: HRGMv2_1813_23_49
Type: CAZyme
Location: 52076 - 54469 (+)
Type: CAZyme
Location: 52076 - 54469 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.