Cluster: HRGMv2_1813_CGC24
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1813
- CGC Family ID: CGCFAM_08801
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1813_10 | HRGMv2_1813_10_97 | 107230 | 110649 | - | GT102 | GT103 | GT99 |
| TC | HRGMv2_1813_10 | HRGMv2_1813_10_98 | 110658 | 111974 | - | 3.A.1.103.6 |
| pfam | HRGMv2_1813_10 | HRGMv2_1813_10_99 | 111964 | 112797 | - | ABC2_membrane |
| CAZyme | HRGMv2_1813_10 | HRGMv2_1813_10_100 | 112922 | 113764 | - | GT2 |
Gene ID: HRGMv2_1813_10_97
Type: CAZyme
Location: 107230 - 110649 (-)
Type: CAZyme
Location: 107230 - 110649 (-)
Gene ID: HRGMv2_1813_10_98
Type: TC
Location: 110658 - 111974 (-)
Type: TC
Location: 110658 - 111974 (-)
Gene ID: HRGMv2_1813_10_99
Type: pfam
Location: 111964 - 112797 (-)
Type: pfam
Location: 111964 - 112797 (-)
Gene ID: HRGMv2_1813_10_100
Type: CAZyme
Location: 112922 - 113764 (-)
Type: CAZyme
Location: 112922 - 113764 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.