Cluster: HRGMv2_1813_CGC42
🧬 Cluster Details
- Gene Count: 30
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_1813
- CGC Family ID: CGCFAM_03875
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1813_20 | HRGMv2_1813_20_20 | 18225 | 18902 | - | 5.A.3.1.1 |
| pfam | HRGMv2_1813_20 | HRGMv2_1813_20_21 | 18905 | 19642 | - | Nitrate_red_del |
| TC | HRGMv2_1813_20 | HRGMv2_1813_20_22 | 19639 | 21183 | - | 5.A.3.1.1 |
| TC | HRGMv2_1813_20 | HRGMv2_1813_20_23 | 21180 | 24956 | - | 5.A.3.1.1 |
| NULL(UNKNOWN) | HRGMv2_1813_20 | HRGMv2_1813_20_24 | 25381 | 26634 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1813_20 | HRGMv2_1813_20_25 | 26691 | 27593 | - | GT2 |
| CAZyme | HRGMv2_1813_20 | HRGMv2_1813_20_26 | 27697 | 28683 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_1813_20 | HRGMv2_1813_20_27 | 28690 | 30576 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1813_20 | HRGMv2_1813_20_28 | 30573 | 31316 | - | GT2 |
| CAZyme | HRGMv2_1813_20 | HRGMv2_1813_20_29 | 31318 | 32379 | - | GT4 |
| CAZyme | HRGMv2_1813_20 | HRGMv2_1813_20_30 | 32381 | 33286 | - | GT2 |
| pfam | HRGMv2_1813_20 | HRGMv2_1813_20_31 | 33426 | 34274 | - | ATPgrasp_TupA |
| TC | HRGMv2_1813_20 | HRGMv2_1813_20_32 | 34264 | 35553 | - | 2.A.66.5.2 |
| TC | HRGMv2_1813_20 | HRGMv2_1813_20_33 | 35558 | 37738 | - | 8.A.3.3.2 |
| TC | HRGMv2_1813_20 | HRGMv2_1813_20_34 | 37767 | 38876 | - | 1.B.18.3.1 |
| TC | HRGMv2_1813_20 | HRGMv2_1813_20_35 | 38946 | 39995 | - | 9.B.146.1.7 |
| pfam | HRGMv2_1813_20 | HRGMv2_1813_20_36 | 40176 | 41132 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd |
| TF | HRGMv2_1813_20 | HRGMv2_1813_20_37 | 41315 | 42214 | - | Trans_reg_C |
| TC | HRGMv2_1813_20 | HRGMv2_1813_20_38 | 42994 | 44382 | - | 2.A.1.8.1 |
| STP | HRGMv2_1813_20 | HRGMv2_1813_20_39 | 44744 | 46528 | + | HATPase_c |
| TF | HRGMv2_1813_20 | HRGMv2_1813_20_40 | 46540 | 47190 | + | GerE |
| TC | HRGMv2_1813_20 | HRGMv2_1813_20_41 | 47187 | 48692 | - | 1.B.54.1.9 |
| TC | HRGMv2_1813_20 | HRGMv2_1813_20_42 | 49218 | 49934 | + | 3.A.15.2.1 |
| peptidase | HRGMv2_1813_20 | HRGMv2_1813_20_43 | 50035 | 50601 | + | I51.UPW |
| STP | HRGMv2_1813_20 | HRGMv2_1813_20_44 | 50618 | 52192 | - | SBP_bac_5 |
| TC | HRGMv2_1813_20 | HRGMv2_1813_20_45 | 52327 | 52998 | - | 3.A.1.5.39 |
| TC | HRGMv2_1813_20 | HRGMv2_1813_20_46 | 52995 | 53831 | - | 3.A.1.5.2 |
| TC | HRGMv2_1813_20 | HRGMv2_1813_20_47 | 53821 | 54690 | - | 3.A.1.5.38 |
| TC | HRGMv2_1813_20 | HRGMv2_1813_20_48 | 54687 | 55739 | - | 3.A.1.5.38 |
| TC | HRGMv2_1813_20 | HRGMv2_1813_20_49 | 55739 | 57307 | - | 3.A.1.5.2 |
Gene ID: HRGMv2_1813_20_20
Type: TC
Location: 18225 - 18902 (-)
Type: TC
Location: 18225 - 18902 (-)
Gene ID: HRGMv2_1813_20_21
Type: pfam
Location: 18905 - 19642 (-)
Type: pfam
Location: 18905 - 19642 (-)
Gene ID: HRGMv2_1813_20_22
Type: TC
Location: 19639 - 21183 (-)
Type: TC
Location: 19639 - 21183 (-)
Gene ID: HRGMv2_1813_20_23
Type: TC
Location: 21180 - 24956 (-)
Type: TC
Location: 21180 - 24956 (-)
Gene ID: HRGMv2_1813_20_24
Type:
Location: 25381 - 26634 (-)
Type:
Location: 25381 - 26634 (-)
Gene ID: HRGMv2_1813_20_25
Type: CAZyme
Location: 26691 - 27593 (-)
Type: CAZyme
Location: 26691 - 27593 (-)
Gene ID: HRGMv2_1813_20_26
Type: CAZyme
Location: 27697 - 28683 (-)
Type: CAZyme
Location: 27697 - 28683 (-)
Gene ID: HRGMv2_1813_20_27
Type:
Location: 28690 - 30576 (-)
Type:
Location: 28690 - 30576 (-)
Gene ID: HRGMv2_1813_20_28
Type: CAZyme
Location: 30573 - 31316 (-)
Type: CAZyme
Location: 30573 - 31316 (-)
Gene ID: HRGMv2_1813_20_29
Type: CAZyme
Location: 31318 - 32379 (-)
Type: CAZyme
Location: 31318 - 32379 (-)
Gene ID: HRGMv2_1813_20_30
Type: CAZyme
Location: 32381 - 33286 (-)
Type: CAZyme
Location: 32381 - 33286 (-)
Gene ID: HRGMv2_1813_20_31
Type: pfam
Location: 33426 - 34274 (-)
Type: pfam
Location: 33426 - 34274 (-)
Gene ID: HRGMv2_1813_20_32
Type: TC
Location: 34264 - 35553 (-)
Type: TC
Location: 34264 - 35553 (-)
Gene ID: HRGMv2_1813_20_33
Type: TC
Location: 35558 - 37738 (-)
Type: TC
Location: 35558 - 37738 (-)
Gene ID: HRGMv2_1813_20_34
Type: TC
Location: 37767 - 38876 (-)
Type: TC
Location: 37767 - 38876 (-)
Gene ID: HRGMv2_1813_20_35
Type: TC
Location: 38946 - 39995 (-)
Type: TC
Location: 38946 - 39995 (-)
Gene ID: HRGMv2_1813_20_36
Type: pfam
Location: 40176 - 41132 (-)
Type: pfam
Location: 40176 - 41132 (-)
Gene ID: HRGMv2_1813_20_37
Type: TF
Location: 41315 - 42214 (-)
Type: TF
Location: 41315 - 42214 (-)
Gene ID: HRGMv2_1813_20_38
Type: TC
Location: 42994 - 44382 (-)
Type: TC
Location: 42994 - 44382 (-)
Gene ID: HRGMv2_1813_20_39
Type: STP
Location: 44744 - 46528 (+)
Type: STP
Location: 44744 - 46528 (+)
Gene ID: HRGMv2_1813_20_40
Type: TF
Location: 46540 - 47190 (+)
Type: TF
Location: 46540 - 47190 (+)
Gene ID: HRGMv2_1813_20_41
Type: TC
Location: 47187 - 48692 (-)
Type: TC
Location: 47187 - 48692 (-)
Gene ID: HRGMv2_1813_20_42
Type: TC
Location: 49218 - 49934 (+)
Type: TC
Location: 49218 - 49934 (+)
Gene ID: HRGMv2_1813_20_43
Type: peptidase
Location: 50035 - 50601 (+)
Type: peptidase
Location: 50035 - 50601 (+)
Gene ID: HRGMv2_1813_20_44
Type: STP
Location: 50618 - 52192 (-)
Type: STP
Location: 50618 - 52192 (-)
Gene ID: HRGMv2_1813_20_45
Type: TC
Location: 52327 - 52998 (-)
Type: TC
Location: 52327 - 52998 (-)
Gene ID: HRGMv2_1813_20_46
Type: TC
Location: 52995 - 53831 (-)
Type: TC
Location: 52995 - 53831 (-)
Gene ID: HRGMv2_1813_20_47
Type: TC
Location: 53821 - 54690 (-)
Type: TC
Location: 53821 - 54690 (-)
Gene ID: HRGMv2_1813_20_48
Type: TC
Location: 54687 - 55739 (-)
Type: TC
Location: 54687 - 55739 (-)
Gene ID: HRGMv2_1813_20_49
Type: TC
Location: 55739 - 57307 (-)
Type: TC
Location: 55739 - 57307 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.