Cluster: HRGMv2_1813_CGC33
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1813
- CGC Family ID: CGCFAM_08805
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1813_14 | HRGMv2_1813_14_42 | 49099 | 50211 | - | 3.A.1.1.6 |
| TC | HRGMv2_1813_14 | HRGMv2_1813_14_43 | 50234 | 51052 | - | 3.A.1.1.34 |
| TC | HRGMv2_1813_14 | HRGMv2_1813_14_44 | 51065 | 52003 | - | 3.A.1.1.25 |
| STP | HRGMv2_1813_14 | HRGMv2_1813_14_45 | 52085 | 53338 | - | SBP_bac_1 |
| CAZyme | HRGMv2_1813_14 | HRGMv2_1813_14_46 | 53804 | 55465 | + | GH123 |
Gene ID: HRGMv2_1813_14_42
Type: TC
Location: 49099 - 50211 (-)
Type: TC
Location: 49099 - 50211 (-)
Gene ID: HRGMv2_1813_14_43
Type: TC
Location: 50234 - 51052 (-)
Type: TC
Location: 50234 - 51052 (-)
Gene ID: HRGMv2_1813_14_44
Type: TC
Location: 51065 - 52003 (-)
Type: TC
Location: 51065 - 52003 (-)
Gene ID: HRGMv2_1813_14_45
Type: STP
Location: 52085 - 53338 (-)
Type: STP
Location: 52085 - 53338 (-)
Gene ID: HRGMv2_1813_14_46
Type: CAZyme
Location: 53804 - 55465 (+)
Type: CAZyme
Location: 53804 - 55465 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.