Cluster: HRGMv2_1813_CGC40
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1813
- CGC Family ID: CGCFAM_03485
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1813_17 | HRGMv2_1813_17_103 | 105862 | 107316 | - | CBM12 | GH18 |
| pfam | HRGMv2_1813_17 | HRGMv2_1813_17_104 | 107496 | 108248 | - | Hydrolase | Hydrolase_like | Hydrolase_6 | HAD_2 |
| TF | HRGMv2_1813_17 | HRGMv2_1813_17_105 | 108316 | 109536 | - | MarR |
| CAZyme | HRGMv2_1813_17 | HRGMv2_1813_17_106 | 109564 | 110703 | - | CE9 |
| pfam | HRGMv2_1813_17 | HRGMv2_1813_17_107 | 110722 | 111522 | - | Glucosamine_iso |
| TC | HRGMv2_1813_17 | HRGMv2_1813_17_108 | 111858 | 113804 | + | 4.A.1.1.2 |
| pfam | HRGMv2_1813_17 | HRGMv2_1813_17_109 | 114056 | 115720 | + | tRNA-synt_1c | tRNA-synt_1c_C | tRNA-synt_1c_C2 |
| TC | HRGMv2_1813_17 | HRGMv2_1813_17_110 | 116299 | 117702 | + | 1.B.25.1.13 |
| pfam | HRGMv2_1813_17 | HRGMv2_1813_17_111 | 117816 | 118142 | + | YbfN |
| CAZyme | HRGMv2_1813_17 | HRGMv2_1813_17_112 | 118157 | 120814 | + | GH20 |
Gene ID: HRGMv2_1813_17_103
Type: CAZyme
Location: 105862 - 107316 (-)
Type: CAZyme
Location: 105862 - 107316 (-)
Gene ID: HRGMv2_1813_17_104
Type: pfam
Location: 107496 - 108248 (-)
Type: pfam
Location: 107496 - 108248 (-)
Gene ID: HRGMv2_1813_17_105
Type: TF
Location: 108316 - 109536 (-)
Type: TF
Location: 108316 - 109536 (-)
Gene ID: HRGMv2_1813_17_106
Type: CAZyme
Location: 109564 - 110703 (-)
Type: CAZyme
Location: 109564 - 110703 (-)
Gene ID: HRGMv2_1813_17_107
Type: pfam
Location: 110722 - 111522 (-)
Type: pfam
Location: 110722 - 111522 (-)
Gene ID: HRGMv2_1813_17_108
Type: TC
Location: 111858 - 113804 (+)
Type: TC
Location: 111858 - 113804 (+)
Gene ID: HRGMv2_1813_17_109
Type: pfam
Location: 114056 - 115720 (+)
Type: pfam
Location: 114056 - 115720 (+)
Gene ID: HRGMv2_1813_17_110
Type: TC
Location: 116299 - 117702 (+)
Type: TC
Location: 116299 - 117702 (+)
Gene ID: HRGMv2_1813_17_111
Type: pfam
Location: 117816 - 118142 (+)
Type: pfam
Location: 117816 - 118142 (+)
Gene ID: HRGMv2_1813_17_112
Type: CAZyme
Location: 118157 - 120814 (+)
Type: CAZyme
Location: 118157 - 120814 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.