Cluster: HRGMv2_1813_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1813
- CGC Family ID: CGCFAM_03292
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1813_5 | HRGMv2_1813_5_171 | 202067 | 203569 | + | GH23 |
| pfam | HRGMv2_1813_5 | HRGMv2_1813_5_172 | 203570 | 204082 | - | dCMP_cyt_deam_1 | MafB19-deam |
| TC | HRGMv2_1813_5 | HRGMv2_1813_5_173 | 204267 | 205319 | + | 9.B.8.3.4 |
| pfam | HRGMv2_1813_5 | HRGMv2_1813_5_174 | 205519 | 206670 | + | Fe-ADH | Fe-ADH_2 | ADH_Fe_C |
| pfam | HRGMv2_1813_5 | HRGMv2_1813_5_175 | 206711 | 207367 | - | HAD |
| TC | HRGMv2_1813_5 | HRGMv2_1813_5_176 | 207371 | 208657 | - | 4.A.1.2.7 |
Gene ID: HRGMv2_1813_5_171
Type: CAZyme
Location: 202067 - 203569 (+)
Type: CAZyme
Location: 202067 - 203569 (+)
Gene ID: HRGMv2_1813_5_172
Type: pfam
Location: 203570 - 204082 (-)
Type: pfam
Location: 203570 - 204082 (-)
Gene ID: HRGMv2_1813_5_173
Type: TC
Location: 204267 - 205319 (+)
Type: TC
Location: 204267 - 205319 (+)
Gene ID: HRGMv2_1813_5_174
Type: pfam
Location: 205519 - 206670 (+)
Type: pfam
Location: 205519 - 206670 (+)
Gene ID: HRGMv2_1813_5_175
Type: pfam
Location: 206711 - 207367 (-)
Type: pfam
Location: 206711 - 207367 (-)
Gene ID: HRGMv2_1813_5_176
Type: TC
Location: 207371 - 208657 (-)
Type: TC
Location: 207371 - 208657 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.