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Cluster: HRGMv2_1813_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1813_11 HRGMv2_1813_11_145 171290 172282 + CBM50
STP HRGMv2_1813_11 HRGMv2_1813_11_146 172337 173335 + Sigma70_r2 | Sigma70_r3 | Sigma70_r4
pfam HRGMv2_1813_11 HRGMv2_1813_11_147 173418 175973 - MutS_V | MutS_I | MutS_II | MutS_IV | MutS_III
TC HRGMv2_1813_11 HRGMv2_1813_11_148 176755 177072 + 4.A.3.2.5
TC HRGMv2_1813_11 HRGMv2_1813_11_149 177084 178445 + 4.A.3.2.5
CAZyme HRGMv2_1813_11 HRGMv2_1813_11_150 178494 179879 + GH1
TF HRGMv2_1813_11 HRGMv2_1813_11_151 179894 180742 + HTH_AraC
pfam HRGMv2_1813_11 HRGMv2_1813_11_152 180896 181657 + YdjC
TC HRGMv2_1813_11 HRGMv2_1813_11_153 181686 183080 - 2.A.1.26.1
Gene ID: HRGMv2_1813_11_145
Type: CAZyme
Location: 171290 - 172282 (+)
Gene ID: HRGMv2_1813_11_146
Type: STP
Location: 172337 - 173335 (+)
Gene ID: HRGMv2_1813_11_147
Type: pfam
Location: 173418 - 175973 (-)
Gene ID: HRGMv2_1813_11_148
Type: TC
Location: 176755 - 177072 (+)
Gene ID: HRGMv2_1813_11_149
Type: TC
Location: 177084 - 178445 (+)
Gene ID: HRGMv2_1813_11_150
Type: CAZyme
Location: 178494 - 179879 (+)
Gene ID: HRGMv2_1813_11_151
Type: TF
Location: 179894 - 180742 (+)
Gene ID: HRGMv2_1813_11_152
Type: pfam
Location: 180896 - 181657 (+)
Gene ID: HRGMv2_1813_11_153
Type: TC
Location: 181686 - 183080 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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