Cluster: HRGMv2_1813_CGC50
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1813
- CGC Family ID: CGCFAM_00508
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1813_24 | HRGMv2_1813_24_64 | 63435 | 64877 | + | 4.A.1.2.3 |
| CAZyme | HRGMv2_1813_24 | HRGMv2_1813_24_65 | 65103 | 66533 | + | GH1 |
| NULL(UNKNOWN) | HRGMv2_1813_24 | HRGMv2_1813_24_66 | 67009 | 68130 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_1813_24 | HRGMv2_1813_24_67 | 68177 | 68335 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1813_24 | HRGMv2_1813_24_68 | 68356 | 68991 | - | 2.A.53.3.12 |
| TC | HRGMv2_1813_24 | HRGMv2_1813_24_69 | 69512 | 70123 | - | 2.A.76.1.5 |
Gene ID: HRGMv2_1813_24_64
Type: TC
Location: 63435 - 64877 (+)
Type: TC
Location: 63435 - 64877 (+)
Gene ID: HRGMv2_1813_24_65
Type: CAZyme
Location: 65103 - 66533 (+)
Type: CAZyme
Location: 65103 - 66533 (+)
Gene ID: HRGMv2_1813_24_66
Type:
Location: 67009 - 68130 (+)
Type:
Location: 67009 - 68130 (+)
Gene ID: HRGMv2_1813_24_67
Type:
Location: 68177 - 68335 (-)
Type:
Location: 68177 - 68335 (-)
Gene ID: HRGMv2_1813_24_68
Type: TC
Location: 68356 - 68991 (-)
Type: TC
Location: 68356 - 68991 (-)
Gene ID: HRGMv2_1813_24_69
Type: TC
Location: 69512 - 70123 (-)
Type: TC
Location: 69512 - 70123 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia_J
Species
Serratia_J liquefaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.