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Cluster: HRGMv2_1813_CGC46

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1813_22 HRGMv2_1813_22_19 26681 27670 - 3.A.1.5.27
TC HRGMv2_1813_22 HRGMv2_1813_22_20 27667 28647 - 3.A.1.5.27
TC HRGMv2_1813_22 HRGMv2_1813_22_21 28663 29565 - 3.A.1.5.27
TC HRGMv2_1813_22 HRGMv2_1813_22_22 29577 30596 - 3.A.1.5.39
TC HRGMv2_1813_22 HRGMv2_1813_22_23 30767 32374 - 3.A.1.5.27
CAZyme HRGMv2_1813_22 HRGMv2_1813_22_24 32976 34667 - GH18
pfam HRGMv2_1813_22 HRGMv2_1813_22_25 35045 35341 + TumE
TF HRGMv2_1813_22 HRGMv2_1813_22_26 35329 35685 + 0043095
TC HRGMv2_1813_22 HRGMv2_1813_22_27 36098 37429 - 2.A.1.4.4
Gene ID: HRGMv2_1813_22_19
Type: TC
Location: 26681 - 27670 (-)
Gene ID: HRGMv2_1813_22_20
Type: TC
Location: 27667 - 28647 (-)
Gene ID: HRGMv2_1813_22_21
Type: TC
Location: 28663 - 29565 (-)
Gene ID: HRGMv2_1813_22_22
Type: TC
Location: 29577 - 30596 (-)
Gene ID: HRGMv2_1813_22_23
Type: TC
Location: 30767 - 32374 (-)
Gene ID: HRGMv2_1813_22_24
Type: CAZyme
Location: 32976 - 34667 (-)
Gene ID: HRGMv2_1813_22_25
Type: pfam
Location: 35045 - 35341 (+)
Gene ID: HRGMv2_1813_22_26
Type: TF
Location: 35329 - 35685 (+)
Gene ID: HRGMv2_1813_22_27
Type: TC
Location: 36098 - 37429 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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