Genome Details
Selected Rep_genome_ID: Rep_597
Total Genomes Found: 5
Total Genomes Found: 5
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A ihumii
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| C40.bin_1 | 2,759,031 | 100% | 0% | China(Inner Mongolia) | Asia | IMGG |
| Rep_597 | 2,796,317 | 100% | 0% | NA | NA | WIS |
| SPMP100_bin.100 | 2,691,333 | 98.08% | 0% | Singapore | Asia | SPMP |
| SPMP13_bin.102 | 2,489,801 | 91.16% | 0% | Singapore | Asia | SPMP |
| SW153_bin.22 | 2,551,540 | 100% | 0% | NA | Africa | H3AfricaPhase2 |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| Rep_597_CGC3 | CGCFAM_00013 | Yes | 7 | 1 | |
| Rep_597_CGC28 | CGCFAM_00857 | Yes | 4 | 1 | |
| Rep_597_CGC35 | CGCFAM_00915 | Yes | 12 | 1 | |
| Rep_597_CGC14 | CGCFAM_00975 | Yes | 3 | 1 | |
| Rep_597_CGC2 | CGCFAM_01034 | Yes | 6 | 2 | |
| Rep_597_CGC8 | CGCFAM_01376 | Yes | 5 | 2 | |
| Rep_597_CGC20 | CGCFAM_01784 | Yes | 4 | 1 | |
| Rep_597_CGC9 | CGCFAM_02163 | Yes | 9 | 1 | |
| Rep_597_CGC15 | CGCFAM_02861 | Yes | 4 | 2 | |
| Rep_597_CGC33 | CGCFAM_03644 | Yes | 7 | 3 | |
| Rep_597_CGC25 | CGCFAM_03645 | Yes | 6 | 2 | |
| Rep_597_CGC23 | CGCFAM_05605 | Yes | 6 | 1 | |
| Rep_597_CGC4 | CGCFAM_05606 | Yes | 4 | 1 | |
| Rep_597_CGC13 | CGCFAM_05939 | Yes | 5 | 1 | |
| Rep_597_CGC18 | CGCFAM_07888 | Yes | 5 | 2 | |
| Rep_597_CGC7 | CGCFAM_09500 | Yes | 5 | 1 | |
| Rep_597_CGC16 | CGCFAM_09501 | Yes | 4 | 1 | |
| Rep_597_CGC36 | CGCFAM_09502 | Yes | 4 | 1 | |
| Rep_597_CGC29 | CGCFAM_09503 | Yes | 6 | 1 |
Top CAZyme Families