Cluster: Rep_597_CGC25
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_597
- CGC Family ID: CGCFAM_03645
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_597_c_0 | Rep_597_c_0_1299 | 1560938 | 1563277 | + | CBM67 | GH78 |
| pfam | Rep_597_c_0 | Rep_597_c_0_1300 | 1563907 | 1564611 | - | Glyco_tranf_2_5 |
| NULL(UNKNOWN) | Rep_597_c_0 | Rep_597_c_0_1301 | 1564730 | 1564843 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_597_c_0 | Rep_597_c_0_1302 | 1564854 | 1565480 | - | GT32 |
| pfam | Rep_597_c_0 | Rep_597_c_0_1303 | 1565657 | 1566754 | + | MMR_HSR1 | FeoB_N | YchF-GTPase_C |
| TC | Rep_597_c_0 | Rep_597_c_0_1304 | 1566793 | 1567980 | + | 2.A.1.7.17 |
Gene ID: Rep_597_c_0_1299
Type: CAZyme
Location: 1560938 - 1563277 (+)
Type: CAZyme
Location: 1560938 - 1563277 (+)
Gene ID: Rep_597_c_0_1300
Type: pfam
Location: 1563907 - 1564611 (-)
Type: pfam
Location: 1563907 - 1564611 (-)
Gene ID: Rep_597_c_0_1301
Type:
Location: 1564730 - 1564843 (-)
Type:
Location: 1564730 - 1564843 (-)
Gene ID: Rep_597_c_0_1302
Type: CAZyme
Location: 1564854 - 1565480 (-)
Type: CAZyme
Location: 1564854 - 1565480 (-)
Gene ID: Rep_597_c_0_1303
Type: pfam
Location: 1565657 - 1566754 (+)
Type: pfam
Location: 1565657 - 1566754 (+)
Gene ID: Rep_597_c_0_1304
Type: TC
Location: 1566793 - 1567980 (+)
Type: TC
Location: 1566793 - 1567980 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A ihumii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_597_c_0_1301 | vegetarian > omnivore | 1.77345 | 0.00250 |
| Rep_597_c_0_1301 | vegetarian > vegan | 1.85655 | 0.01064 |
| Rep_597_c_0_1302 | vegetarian > omnivore | 1.68614 | 0.00250 |