Cluster: Rep_597_CGC7
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_597
- CGC Family ID: CGCFAM_09500
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_597_c_0 | Rep_597_c_0_477 | 564928 | 566835 | - | 2.A.16.2.2 |
| STP | Rep_597_c_0 | Rep_597_c_0_478 | 566832 | 567467 | - | Nitroreductase |
| peptidase | Rep_597_c_0 | Rep_597_c_0_479 | 567544 | 568440 | + | S09.UPW |
| CAZyme | Rep_597_c_0 | Rep_597_c_0_480 | 568728 | 570026 | + | CE7 |
| TC | Rep_597_c_0 | Rep_597_c_0_481 | 570626 | 572074 | + | 3.A.1.32.3 |
Gene ID: Rep_597_c_0_477
Type: TC
Location: 564928 - 566835 (-)
Type: TC
Location: 564928 - 566835 (-)
Gene ID: Rep_597_c_0_478
Type: STP
Location: 566832 - 567467 (-)
Type: STP
Location: 566832 - 567467 (-)
Gene ID: Rep_597_c_0_479
Type: peptidase
Location: 567544 - 568440 (+)
Type: peptidase
Location: 567544 - 568440 (+)
Gene ID: Rep_597_c_0_480
Type: CAZyme
Location: 568728 - 570026 (+)
Type: CAZyme
Location: 568728 - 570026 (+)
Gene ID: Rep_597_c_0_481
Type: TC
Location: 570626 - 572074 (+)
Type: TC
Location: 570626 - 572074 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A ihumii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_597_c_0_479 | vegetarian > omnivore | 1.28714 | 0.00250 |
| Rep_597_c_0_480 | vegan > omnivore | 1.08529 | 0.00863 |
| Rep_597_c_0_480 | vegetarian > omnivore | 1.48210 | 0.00250 |