Cluster: Rep_597_CGC35
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_597
- CGC Family ID: CGCFAM_00915
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_597_c_0 | Rep_597_c_0_1861 | 2261498 | 2262877 | - | GH177 |
| TC | Rep_597_c_0 | Rep_597_c_0_1862 | 2262935 | 2264509 | - | 9.A.25.1.1 |
| TC | Rep_597_c_0 | Rep_597_c_0_1863 | 2264996 | 2265865 | - | 3.A.2.1.5 |
| TC | Rep_597_c_0 | Rep_597_c_0_1864 | 2265869 | 2266534 | - | 3.A.2.1.5 |
| TC | Rep_597_c_0 | Rep_597_c_0_1865 | 2266483 | 2267448 | - | 3.A.2.1.2 |
| pfam | Rep_597_c_0 | Rep_597_c_0_1866 | 2267490 | 2268044 | - | OSCP |
| pfam | Rep_597_c_0 | Rep_597_c_0_1867 | 2268049 | 2268549 | - | ATP-synt_B |
| TC | Rep_597_c_0 | Rep_597_c_0_1868 | 2268565 | 2268813 | - | 3.A.2.1.6 |
| TC | Rep_597_c_0 | Rep_597_c_0_1869 | 2268942 | 2270018 | - | 3.A.2.1.7 |
| NULL(UNKNOWN) | Rep_597_c_0 | Rep_597_c_0_1870 | 2270011 | 2270424 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_597_c_0 | Rep_597_c_0_1871 | 2270458 | 2270694 | - | ATP-synt_DE_N |
| TC | Rep_597_c_0 | Rep_597_c_0_1872 | 2270691 | 2272235 | - | 3.A.2.1.7 |
Gene ID: Rep_597_c_0_1861
Type: CAZyme
Location: 2261498 - 2262877 (-)
Type: CAZyme
Location: 2261498 - 2262877 (-)
Gene ID: Rep_597_c_0_1862
Type: TC
Location: 2262935 - 2264509 (-)
Type: TC
Location: 2262935 - 2264509 (-)
Gene ID: Rep_597_c_0_1863
Type: TC
Location: 2264996 - 2265865 (-)
Type: TC
Location: 2264996 - 2265865 (-)
Gene ID: Rep_597_c_0_1864
Type: TC
Location: 2265869 - 2266534 (-)
Type: TC
Location: 2265869 - 2266534 (-)
Gene ID: Rep_597_c_0_1865
Type: TC
Location: 2266483 - 2267448 (-)
Type: TC
Location: 2266483 - 2267448 (-)
Gene ID: Rep_597_c_0_1866
Type: pfam
Location: 2267490 - 2268044 (-)
Type: pfam
Location: 2267490 - 2268044 (-)
Gene ID: Rep_597_c_0_1867
Type: pfam
Location: 2268049 - 2268549 (-)
Type: pfam
Location: 2268049 - 2268549 (-)
Gene ID: Rep_597_c_0_1868
Type: TC
Location: 2268565 - 2268813 (-)
Type: TC
Location: 2268565 - 2268813 (-)
Gene ID: Rep_597_c_0_1869
Type: TC
Location: 2268942 - 2270018 (-)
Type: TC
Location: 2268942 - 2270018 (-)
Gene ID: Rep_597_c_0_1870
Type:
Location: 2270011 - 2270424 (-)
Type:
Location: 2270011 - 2270424 (-)
Gene ID: Rep_597_c_0_1871
Type: pfam
Location: 2270458 - 2270694 (-)
Type: pfam
Location: 2270458 - 2270694 (-)
Gene ID: Rep_597_c_0_1872
Type: TC
Location: 2270691 - 2272235 (-)
Type: TC
Location: 2270691 - 2272235 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A ihumii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_597_c_0_1861 | vegetarian > omnivore | 1.09889 | 0.00250 |
| Rep_597_c_0_1863 | vegetarian > omnivore | 1.39248 | 0.00250 |
| Rep_597_c_0_1866 | vegetarian > omnivore | 1.38834 | 0.00250 |
| Rep_597_c_0_1867 | vegetarian > omnivore | 1.32099 | 0.00250 |
| Rep_597_c_0_1868 | vegetarian > omnivore | 1.35611 | 0.00250 |
| Rep_597_c_0_1870 | vegan > omnivore | 1.35544 | 0.00863 |
| Rep_597_c_0_1870 | vegetarian > omnivore | 1.90604 | 0.00250 |
| Rep_597_c_0_1871 | vegan > omnivore | 1.27613 | 0.00863 |
| Rep_597_c_0_1871 | vegetarian > omnivore | 1.49365 | 0.00250 |