Cluster: Rep_597_CGC4
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_597
- CGC Family ID: CGCFAM_05606
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_597_c_0 | Rep_597_c_0_314 | 363273 | 364553 | + | 9.A.40.1.2 |
| pfam | Rep_597_c_0 | Rep_597_c_0_315 | 364952 | 365803 | - | adh_short | adh_short_C2 |
| NULL(UNKNOWN) | Rep_597_c_0 | Rep_597_c_0_316 | 365863 | 366705 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_597_c_0 | Rep_597_c_0_317 | 366789 | 368183 | + | CE11 |
Gene ID: Rep_597_c_0_314
Type: TC
Location: 363273 - 364553 (+)
Type: TC
Location: 363273 - 364553 (+)
Gene ID: Rep_597_c_0_315
Type: pfam
Location: 364952 - 365803 (-)
Type: pfam
Location: 364952 - 365803 (-)
Gene ID: Rep_597_c_0_316
Type:
Location: 365863 - 366705 (-)
Type:
Location: 365863 - 366705 (-)
Gene ID: Rep_597_c_0_317
Type: CAZyme
Location: 366789 - 368183 (+)
Type: CAZyme
Location: 366789 - 368183 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A ihumii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_597_c_0_316 | vegetarian > omnivore | 1.16826 | 0.00250 |