Cluster: Rep_597_CGC36
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_597
- CGC Family ID: CGCFAM_09502
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_597_c_0 | Rep_597_c_0_1876 | 2274818 | 2277103 | - | 3.A.11.3.1 |
| TC | Rep_597_c_0 | Rep_597_c_0_1877 | 2277333 | 2278229 | + | 2.A.115.1.5 |
| TC | Rep_597_c_0 | Rep_597_c_0_1878 | 2278670 | 2279857 | + | 2.A.23.2.1 |
| CAZyme | Rep_597_c_0 | Rep_597_c_0_1879 | 2280117 | 2282111 | + | GH127 |
Gene ID: Rep_597_c_0_1876
Type: TC
Location: 2274818 - 2277103 (-)
Type: TC
Location: 2274818 - 2277103 (-)
Gene ID: Rep_597_c_0_1877
Type: TC
Location: 2277333 - 2278229 (+)
Type: TC
Location: 2277333 - 2278229 (+)
Gene ID: Rep_597_c_0_1878
Type: TC
Location: 2278670 - 2279857 (+)
Type: TC
Location: 2278670 - 2279857 (+)
Gene ID: Rep_597_c_0_1879
Type: CAZyme
Location: 2280117 - 2282111 (+)
Type: CAZyme
Location: 2280117 - 2282111 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A ihumii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_597_c_0_1876 | vegetarian > omnivore | 1.37269 | 0.00250 |
| Rep_597_c_0_1877 | vegetarian > omnivore | 1.34242 | 0.00250 |
| Rep_597_c_0_1878 | vegetarian > omnivore | 1.08593 | 0.00250 |