Cluster: Rep_597_CGC16
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_597
- CGC Family ID: CGCFAM_09501
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_597_c_0 | Rep_597_c_0_883 | 1041106 | 1041807 | + | 1.A.8.2.9 |
| pfam | Rep_597_c_0 | Rep_597_c_0_884 | 1041992 | 1042555 | - | Lipocalin_3 |
| peptidase | Rep_597_c_0 | Rep_597_c_0_885 | 1042680 | 1043180 | - | C26.UPW |
| CAZyme | Rep_597_c_0 | Rep_597_c_0_886 | 1043332 | 1045089 | - | GH13_31 |
Gene ID: Rep_597_c_0_883
Type: TC
Location: 1041106 - 1041807 (+)
Type: TC
Location: 1041106 - 1041807 (+)
Gene ID: Rep_597_c_0_884
Type: pfam
Location: 1041992 - 1042555 (-)
Type: pfam
Location: 1041992 - 1042555 (-)
Gene ID: Rep_597_c_0_885
Type: peptidase
Location: 1042680 - 1043180 (-)
Type: peptidase
Location: 1042680 - 1043180 (-)
Gene ID: Rep_597_c_0_886
Type: CAZyme
Location: 1043332 - 1045089 (-)
Type: CAZyme
Location: 1043332 - 1045089 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A ihumii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_597_c_0_883 | vegetarian > omnivore | 1.15311 | 0.00250 |
| Rep_597_c_0_884 | vegan > omnivore | 1.14128 | 0.00863 |
| Rep_597_c_0_884 | vegetarian > omnivore | 1.42728 | 0.00250 |