Cluster: Rep_597_CGC23
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_597
- CGC Family ID: CGCFAM_05605
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_597_c_0 | Rep_597_c_0_1278 | 1533861 | 1535546 | - | GT83 |
| pfam | Rep_597_c_0 | Rep_597_c_0_1279 | 1535933 | 1536775 | - | AP_endonuc_2 |
| TC | Rep_597_c_0 | Rep_597_c_0_1280 | 1536782 | 1537918 | + | 9.B.168.1.1 |
| TC | Rep_597_c_0 | Rep_597_c_0_1281 | 1537974 | 1539650 | + | 9.B.174.1.2 |
| pfam | Rep_597_c_0 | Rep_597_c_0_1282 | 1540203 | 1540727 | - | Chromate_transp |
| TC | Rep_597_c_0 | Rep_597_c_0_1283 | 1540724 | 1541269 | - | 2.A.51.1.6 |
Gene ID: Rep_597_c_0_1278
Type: CAZyme
Location: 1533861 - 1535546 (-)
Type: CAZyme
Location: 1533861 - 1535546 (-)
Gene ID: Rep_597_c_0_1279
Type: pfam
Location: 1535933 - 1536775 (-)
Type: pfam
Location: 1535933 - 1536775 (-)
Gene ID: Rep_597_c_0_1280
Type: TC
Location: 1536782 - 1537918 (+)
Type: TC
Location: 1536782 - 1537918 (+)
Gene ID: Rep_597_c_0_1281
Type: TC
Location: 1537974 - 1539650 (+)
Type: TC
Location: 1537974 - 1539650 (+)
Gene ID: Rep_597_c_0_1282
Type: pfam
Location: 1540203 - 1540727 (-)
Type: pfam
Location: 1540203 - 1540727 (-)
Gene ID: Rep_597_c_0_1283
Type: TC
Location: 1540724 - 1541269 (-)
Type: TC
Location: 1540724 - 1541269 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A ihumii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_597_c_0_1278 | vegetarian > omnivore | 1.02158 | 0.00250 |
| Rep_597_c_0_1282 | vegetarian > omnivore | 1.28726 | 0.00250 |
| Rep_597_c_0_1283 | vegetarian > omnivore | 1.53957 | 0.00250 |