Cluster: Rep_597_CGC33
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_597
- CGC Family ID: CGCFAM_03644
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_597_c_0 | Rep_597_c_0_1681 | 2058694 | 2060118 | - | CE20 |
| CAZyme | Rep_597_c_0 | Rep_597_c_0_1682 | 2060196 | 2061626 | - | CE20 |
| CAZyme | Rep_597_c_0 | Rep_597_c_0_1683 | 2061674 | 2063095 | - | CE20 |
| TC | Rep_597_c_0 | Rep_597_c_0_1684 | 2063226 | 2064323 | - | 2.A.86.1.8 |
| pfam | Rep_597_c_0 | Rep_597_c_0_1685 | 2064378 | 2065037 | - | PS_Dcarbxylase |
| pfam | Rep_597_c_0 | Rep_597_c_0_1686 | 2065053 | 2065946 | - | CTP_transf_1 |
| TC | Rep_597_c_0 | Rep_597_c_0_1687 | 2065927 | 2067897 | - | 3.A.25.2.1 |
Gene ID: Rep_597_c_0_1681
Type: CAZyme
Location: 2058694 - 2060118 (-)
Type: CAZyme
Location: 2058694 - 2060118 (-)
Gene ID: Rep_597_c_0_1682
Type: CAZyme
Location: 2060196 - 2061626 (-)
Type: CAZyme
Location: 2060196 - 2061626 (-)
Gene ID: Rep_597_c_0_1683
Type: CAZyme
Location: 2061674 - 2063095 (-)
Type: CAZyme
Location: 2061674 - 2063095 (-)
Gene ID: Rep_597_c_0_1684
Type: TC
Location: 2063226 - 2064323 (-)
Type: TC
Location: 2063226 - 2064323 (-)
Gene ID: Rep_597_c_0_1685
Type: pfam
Location: 2064378 - 2065037 (-)
Type: pfam
Location: 2064378 - 2065037 (-)
Gene ID: Rep_597_c_0_1686
Type: pfam
Location: 2065053 - 2065946 (-)
Type: pfam
Location: 2065053 - 2065946 (-)
Gene ID: Rep_597_c_0_1687
Type: TC
Location: 2065927 - 2067897 (-)
Type: TC
Location: 2065927 - 2067897 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A ihumii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_597_c_0_1682 | vegetarian > omnivore | 1.24828 | 0.00250 |
| Rep_597_c_0_1683 | vegan > omnivore | 1.22400 | 0.00863 |
| Rep_597_c_0_1683 | vegetarian > omnivore | 1.33333 | 0.00250 |
| Rep_597_c_0_1684 | vegetarian > omnivore | 1.26886 | 0.00250 |
| Rep_597_c_0_1685 | vegetarian > omnivore | 1.00764 | 0.00250 |
| Rep_597_c_0_1686 | vegetarian > omnivore | 1.46922 | 0.00250 |