Cluster: Rep_597_CGC8
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_597
- CGC Family ID: CGCFAM_01376
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_597_c_0 | Rep_597_c_0_498 | 592750 | 593574 | + | CE1 |
| NULL(UNKNOWN) | Rep_597_c_0 | Rep_597_c_0_499 | 594240 | 596717 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_597_c_0 | Rep_597_c_0_500 | 597172 | 598857 | - | 2.A.81.1.2 |
| CAZyme | Rep_597_c_0 | Rep_597_c_0_501 | 599449 | 602637 | + | GH106 |
| TC | Rep_597_c_0 | Rep_597_c_0_502 | 603189 | 604124 | - | 1.A.23.2.1 |
Gene ID: Rep_597_c_0_498
Type: CAZyme
Location: 592750 - 593574 (+)
Type: CAZyme
Location: 592750 - 593574 (+)
Gene ID: Rep_597_c_0_499
Type:
Location: 594240 - 596717 (+)
Type:
Location: 594240 - 596717 (+)
Gene ID: Rep_597_c_0_500
Type: TC
Location: 597172 - 598857 (-)
Type: TC
Location: 597172 - 598857 (-)
Gene ID: Rep_597_c_0_501
Type: CAZyme
Location: 599449 - 602637 (+)
Type: CAZyme
Location: 599449 - 602637 (+)
Gene ID: Rep_597_c_0_502
Type: TC
Location: 603189 - 604124 (-)
Type: TC
Location: 603189 - 604124 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A ihumii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_597_c_0_498 | vegan > omnivore | 1.32705 | 0.00863 |
| Rep_597_c_0_498 | vegetarian > omnivore | 1.02301 | 0.00250 |
| Rep_597_c_0_499 | vegan > omnivore | 1.07652 | 0.00863 |
| Rep_597_c_0_499 | vegetarian > omnivore | 1.21432 | 0.00250 |