Cluster: Rep_597_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_597
- CGC Family ID: CGCFAM_05939
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_597_c_0 | Rep_597_c_0_778 | 914314 | 916677 | - | 9.B.14.3.1 |
| pfam | Rep_597_c_0 | Rep_597_c_0_779 | 916999 | 917721 | - | SIR2 |
| CAZyme | Rep_597_c_0 | Rep_597_c_0_780 | 918092 | 920029 | + | GH13_14 |
| pfam | Rep_597_c_0 | Rep_597_c_0_781 | 920261 | 920938 | + | Hydrolase | HAD_2 |
| TC | Rep_597_c_0 | Rep_597_c_0_782 | 921100 | 921798 | - | 1.B.44.2.1 |
Gene ID: Rep_597_c_0_778
Type: TC
Location: 914314 - 916677 (-)
Type: TC
Location: 914314 - 916677 (-)
Gene ID: Rep_597_c_0_779
Type: pfam
Location: 916999 - 917721 (-)
Type: pfam
Location: 916999 - 917721 (-)
Gene ID: Rep_597_c_0_780
Type: CAZyme
Location: 918092 - 920029 (+)
Type: CAZyme
Location: 918092 - 920029 (+)
Gene ID: Rep_597_c_0_781
Type: pfam
Location: 920261 - 920938 (+)
Type: pfam
Location: 920261 - 920938 (+)
Gene ID: Rep_597_c_0_782
Type: TC
Location: 921100 - 921798 (-)
Type: TC
Location: 921100 - 921798 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A ihumii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_597_c_0_778 | vegetarian > omnivore | 1.26313 | 0.00250 |
| Rep_597_c_0_780 | vegetarian > omnivore | 1.24972 | 0.00250 |
| Rep_597_c_0_781 | vegetarian > omnivore | 1.15779 | 0.00250 |
| Rep_597_c_0_782 | vegan > omnivore | 1.26315 | 0.00863 |
| Rep_597_c_0_782 | vegetarian > omnivore | 1.41559 | 0.00250 |