Cluster: Rep_597_CGC20
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_597
- CGC Family ID: CGCFAM_01784
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_597_c_0 | Rep_597_c_0_1075 | 1278653 | 1281376 | - | CBM67 | GH78 |
| NULL(UNKNOWN) | Rep_597_c_0 | Rep_597_c_0_1076 | 1281801 | 1282322 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_597_c_0 | Rep_597_c_0_1077 | 1283204 | 1283944 | - | Fer4_19 | zf-CDGSH | zf-CDGSH |
| TC | Rep_597_c_0 | Rep_597_c_0_1078 | 1284004 | 1285371 | - | 2.A.66.1.32 |
Gene ID: Rep_597_c_0_1075
Type: CAZyme
Location: 1278653 - 1281376 (-)
Type: CAZyme
Location: 1278653 - 1281376 (-)
Gene ID: Rep_597_c_0_1076
Type:
Location: 1281801 - 1282322 (-)
Type:
Location: 1281801 - 1282322 (-)
Gene ID: Rep_597_c_0_1077
Type: pfam
Location: 1283204 - 1283944 (-)
Type: pfam
Location: 1283204 - 1283944 (-)
Gene ID: Rep_597_c_0_1078
Type: TC
Location: 1284004 - 1285371 (-)
Type: TC
Location: 1284004 - 1285371 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A ihumii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_597_c_0_1075 | vegetarian > omnivore | 1.10356 | 0.00250 |
| Rep_597_c_0_1077 | vegetarian > omnivore | 1.20215 | 0.00250 |
| Rep_597_c_0_1077 | vegetarian > vegan | 1.20714 | 0.01064 |