Cluster: Rep_597_CGC18
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_597
- CGC Family ID: CGCFAM_07888
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_597_c_0 | Rep_597_c_0_1053 | 1255559 | 1256722 | + | GH171 |
| CAZyme | Rep_597_c_0 | Rep_597_c_0_1054 | 1256712 | 1259201 | + | GH20 |
| NULL(UNKNOWN) | Rep_597_c_0 | Rep_597_c_0_1055 | 1259265 | 1260206 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | Rep_597_c_0 | Rep_597_c_0_1056 | 1260271 | 1261572 | + | S12.UPW |
| TC | Rep_597_c_0 | Rep_597_c_0_1057 | 1261880 | 1263181 | - | 3.A.6.1.1 |
Gene ID: Rep_597_c_0_1053
Type: CAZyme
Location: 1255559 - 1256722 (+)
Type: CAZyme
Location: 1255559 - 1256722 (+)
Gene ID: Rep_597_c_0_1054
Type: CAZyme
Location: 1256712 - 1259201 (+)
Type: CAZyme
Location: 1256712 - 1259201 (+)
Gene ID: Rep_597_c_0_1055
Type:
Location: 1259265 - 1260206 (+)
Type:
Location: 1259265 - 1260206 (+)
Gene ID: Rep_597_c_0_1056
Type: peptidase
Location: 1260271 - 1261572 (+)
Type: peptidase
Location: 1260271 - 1261572 (+)
Gene ID: Rep_597_c_0_1057
Type: TC
Location: 1261880 - 1263181 (-)
Type: TC
Location: 1261880 - 1263181 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A ihumii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_597_c_0_1053 | vegan > omnivore | 1.03188 | 0.00863 |
| Rep_597_c_0_1053 | vegetarian > omnivore | 1.01506 | 0.00250 |
| Rep_597_c_0_1054 | vegetarian > omnivore | 1.01606 | 0.00250 |