Cluster: Rep_597_CGC29
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_597
- CGC Family ID: CGCFAM_09503
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_597_c_0 | Rep_597_c_0_1448 | 1755960 | 1756829 | - | 9.B.168.1.1 |
| TC | Rep_597_c_0 | Rep_597_c_0_1449 | 1757277 | 1758539 | - | 2.A.55.2.6 |
| TC | Rep_597_c_0 | Rep_597_c_0_1450 | 1758711 | 1759385 | - | 9.B.20.1.4 |
| NULL(UNKNOWN) | Rep_597_c_0 | Rep_597_c_0_1451 | 1759648 | 1760307 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_597_c_0 | Rep_597_c_0_1452 | 1760513 | 1761382 | - | PseudoU_synth_2 |
| CAZyme | Rep_597_c_0 | Rep_597_c_0_1453 | 1761797 | 1764034 | + | GH106 |
Gene ID: Rep_597_c_0_1448
Type: TC
Location: 1755960 - 1756829 (-)
Type: TC
Location: 1755960 - 1756829 (-)
Gene ID: Rep_597_c_0_1449
Type: TC
Location: 1757277 - 1758539 (-)
Type: TC
Location: 1757277 - 1758539 (-)
Gene ID: Rep_597_c_0_1450
Type: TC
Location: 1758711 - 1759385 (-)
Type: TC
Location: 1758711 - 1759385 (-)
Gene ID: Rep_597_c_0_1451
Type:
Location: 1759648 - 1760307 (-)
Type:
Location: 1759648 - 1760307 (-)
Gene ID: Rep_597_c_0_1452
Type: pfam
Location: 1760513 - 1761382 (-)
Type: pfam
Location: 1760513 - 1761382 (-)
Gene ID: Rep_597_c_0_1453
Type: CAZyme
Location: 1761797 - 1764034 (+)
Type: CAZyme
Location: 1761797 - 1764034 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A ihumii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_597_c_0_1448 | vegan > omnivore | 1.15365 | 0.00863 |
| Rep_597_c_0_1448 | vegetarian > omnivore | 1.35529 | 0.00250 |
| Rep_597_c_0_1450 | vegetarian > omnivore | 1.97220 | 0.00250 |
| Rep_597_c_0_1451 | vegan > omnivore | 1.35189 | 0.00863 |
| Rep_597_c_0_1452 | vegetarian > omnivore | 1.27781 | 0.00250 |
| Rep_597_c_0_1453 | vegetarian > omnivore | 1.19097 | 0.00250 |