Cluster: Rep_597_CGC28
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_597
- CGC Family ID: CGCFAM_00857
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_597_c_0 | Rep_597_c_0_1403 | 1700198 | 1702978 | - | CBM67 | GH78 |
| pfam | Rep_597_c_0 | Rep_597_c_0_1404 | 1703061 | 1704032 | - | AP_endonuc_2 |
| NULL(UNKNOWN) | Rep_597_c_0 | Rep_597_c_0_1405 | 1704093 | 1704227 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_597_c_0 | Rep_597_c_0_1406 | 1704230 | 1705516 | + | 9.A.40.2.4 |
Gene ID: Rep_597_c_0_1403
Type: CAZyme
Location: 1700198 - 1702978 (-)
Type: CAZyme
Location: 1700198 - 1702978 (-)
Gene ID: Rep_597_c_0_1404
Type: pfam
Location: 1703061 - 1704032 (-)
Type: pfam
Location: 1703061 - 1704032 (-)
Gene ID: Rep_597_c_0_1405
Type:
Location: 1704093 - 1704227 (-)
Type:
Location: 1704093 - 1704227 (-)
Gene ID: Rep_597_c_0_1406
Type: TC
Location: 1704230 - 1705516 (+)
Type: TC
Location: 1704230 - 1705516 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A ihumii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.