Genome Details
Selected Rep_genome_ID: Rep_3050
Total Genomes Found: 8
Total Genomes Found: 8
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp900539695
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| B65.bin_6 | 3,064,280 | 97.96% | 0% | China(Inner Mongolia) | Asia | IMGG |
| CGMR049773 | 2,389,704 | 97.96% | 0% | China | Asia | CGMR |
| DM014_11 | 2,745,593 | 98.3% | 0.57% | NA | Africa | H3AfricaPhase2 |
| HRGMv2_2729 | 3,146,926 | 97.95% | 0% | South Korea | Asia | HRGM |
| MGYG000001627 | 2,528,284 | 98.3% | 0% | China | Asia | UHGG |
| Rep_3050 | 3,303,067 | 98.2993% | 0% | NA | NA | WIS |
| ShaoY_2019_ERR3405878_bin.1 | 2,605,740 | 96.93% | 0% | UK | Europe | ELGG |
| SPMP42_bin.21 | 2,420,945 | 94.22% | 0% | Singapore | Asia | SPMP |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| Rep_3050_CGC7 | CGCFAM_00007 | Yes | 6 | 3 | |
| Rep_3050_CGC21 | CGCFAM_00008 | Yes | 5 | 2 | |
| Rep_3050_CGC37 | CGCFAM_00020 | Yes | 5 | 1 | host glycan/beta-glucan |
| Rep_3050_CGC22 | CGCFAM_00038 | Yes | 6 | 3 | |
| Rep_3050_CGC27 | CGCFAM_00047 | Yes | 11 | 3 | |
| Rep_3050_CGC20 | CGCFAM_00055 | Yes | 5 | 3 | |
| Rep_3050_CGC10 | CGCFAM_00078 | Yes | 5 | 1 | galactan |
| Rep_3050_CGC4 | CGCFAM_00113 | Yes | 5 | 1 | |
| Rep_3050_CGC5 | CGCFAM_00122 | Yes | 19 | 6 | |
| Rep_3050_CGC33 | CGCFAM_00246 | Yes | 9 | 5 | |
| Rep_3050_CGC18 | CGCFAM_00424 | Yes | 4 | 1 | |
| Rep_3050_CGC24 | CGCFAM_00430 | Yes | 8 | 3 | |
| Rep_3050_CGC8 | CGCFAM_00855 | Yes | 8 | 1 | |
| Rep_3050_CGC41 | CGCFAM_00990 | Yes | 8 | 4 | |
| Rep_3050_CGC31 | CGCFAM_01318 | Yes | 9 | 1 | |
| Rep_3050_CGC23 | CGCFAM_03126 | Yes | 7 | 2 | |
| Rep_3050_CGC35 | CGCFAM_04431 | Yes | 8 | 3 | |
| Rep_3050_CGC15 | CGCFAM_05590 | Yes | 4 | 1 | |
| Rep_3050_CGC25 | CGCFAM_11049 | Yes | 19 | 5 |
Top CAZyme Families