Cluster: Rep_3050_CGC21
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3050
- CGC Family ID: CGCFAM_00008
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3050_c_1 | Rep_3050_c_1_655 | 757617 | 758414 | + | 3.A.1.103.6 |
| TC | Rep_3050_c_1 | Rep_3050_c_1_656 | 758427 | 759203 | + | 3.A.1.103.1 |
| CAZyme | Rep_3050_c_1 | Rep_3050_c_1_657 | 759206 | 761068 | + | GT2 |
| pfam | Rep_3050_c_1 | Rep_3050_c_1_658 | 761082 | 761330 | + | FakA-like_M |
| CAZyme | Rep_3050_c_1 | Rep_3050_c_1_659 | 761412 | 763250 | + | GT2 |
Gene ID: Rep_3050_c_1_655
Type: TC
Location: 757617 - 758414 (+)
Type: TC
Location: 757617 - 758414 (+)
Gene ID: Rep_3050_c_1_656
Type: TC
Location: 758427 - 759203 (+)
Type: TC
Location: 758427 - 759203 (+)
Gene ID: Rep_3050_c_1_657
Type: CAZyme
Location: 759206 - 761068 (+)
Type: CAZyme
Location: 759206 - 761068 (+)
Gene ID: Rep_3050_c_1_658
Type: pfam
Location: 761082 - 761330 (+)
Type: pfam
Location: 761082 - 761330 (+)
Gene ID: Rep_3050_c_1_659
Type: CAZyme
Location: 761412 - 763250 (+)
Type: CAZyme
Location: 761412 - 763250 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp900539695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.