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Cluster: Rep_3050_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3050_c_0 Rep_3050_c_0_290 334582 335448 + 3.A.1.3.28
TC Rep_3050_c_0 Rep_3050_c_0_291 335465 336175 + 3.A.1.3.14
NULL(UNKNOWN) Rep_3050_c_0 Rep_3050_c_0_292 336178 336687 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3050_c_0 Rep_3050_c_0_293 336712 337464 + 3.A.1.3.14
NULL(UNKNOWN) Rep_3050_c_0 Rep_3050_c_0_294 337486 337593 + NULL(UNKNOWN)
[View Structural Homologs]
peptidase Rep_3050_c_0 Rep_3050_c_0_295 338029 339579 + I87.UPW
CAZyme Rep_3050_c_0 Rep_3050_c_0_296 340069 349488 + GH43_24 | GH59
NULL(UNKNOWN) Rep_3050_c_0 Rep_3050_c_0_297 349629 350420 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_3050_c_0 Rep_3050_c_0_298 350421 351017 - AAA_28
CAZyme Rep_3050_c_0 Rep_3050_c_0_299 351017 352843 - PL33_1
TF Rep_3050_c_0 Rep_3050_c_0_300 352812 354095 - HTH_AraC | HTH_AraC
TC Rep_3050_c_0 Rep_3050_c_0_301 354105 355901 - 8.A.59.2.1
STP Rep_3050_c_0 Rep_3050_c_0_302 356304 357644 + SBP_bac_1
TC Rep_3050_c_0 Rep_3050_c_0_303 357759 358676 + 3.A.1.1.20
TC Rep_3050_c_0 Rep_3050_c_0_304 358695 359558 + 3.A.1.1.36
CAZyme Rep_3050_c_0 Rep_3050_c_0_305 359645 360811 + GH88
CAZyme Rep_3050_c_0 Rep_3050_c_0_306 360816 362528 + GH154
CAZyme Rep_3050_c_0 Rep_3050_c_0_307 362609 364357 + GH2
CAZyme Rep_3050_c_0 Rep_3050_c_0_308 364372 367134 + GH2
Gene ID: Rep_3050_c_0_290
Type: TC
Location: 334582 - 335448 (+)
Gene ID: Rep_3050_c_0_291
Type: TC
Location: 335465 - 336175 (+)
Gene ID: Rep_3050_c_0_292
Type:
Location: 336178 - 336687 (+)
Gene ID: Rep_3050_c_0_293
Type: TC
Location: 336712 - 337464 (+)
Gene ID: Rep_3050_c_0_294
Type:
Location: 337486 - 337593 (+)
Gene ID: Rep_3050_c_0_295
Type: peptidase
Location: 338029 - 339579 (+)
Gene ID: Rep_3050_c_0_296
Type: CAZyme
Location: 340069 - 349488 (+)
Gene ID: Rep_3050_c_0_297
Type:
Location: 349629 - 350420 (-)
Gene ID: Rep_3050_c_0_298
Type: pfam
Location: 350421 - 351017 (-)
Gene ID: Rep_3050_c_0_299
Type: CAZyme
Location: 351017 - 352843 (-)
Gene ID: Rep_3050_c_0_300
Type: TF
Location: 352812 - 354095 (-)
Gene ID: Rep_3050_c_0_301
Type: TC
Location: 354105 - 355901 (-)
Gene ID: Rep_3050_c_0_302
Type: STP
Location: 356304 - 357644 (+)
Gene ID: Rep_3050_c_0_303
Type: TC
Location: 357759 - 358676 (+)
Gene ID: Rep_3050_c_0_304
Type: TC
Location: 358695 - 359558 (+)
Gene ID: Rep_3050_c_0_305
Type: CAZyme
Location: 359645 - 360811 (+)
Gene ID: Rep_3050_c_0_306
Type: CAZyme
Location: 360816 - 362528 (+)
Gene ID: Rep_3050_c_0_307
Type: CAZyme
Location: 362609 - 364357 (+)
Gene ID: Rep_3050_c_0_308
Type: CAZyme
Location: 364372 - 367134 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3050_c_0_298 vegan > omnivore 3.22267 0.00861
Rep_3050_c_0_298 vegetarian > omnivore 1.72347 0.01557

🧭 Explore Read Mapping of CGC

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