Cluster: Rep_3050_CGC10
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: galactan
- Genome ID: Rep_3050
- CGC Family ID: CGCFAM_00078
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3050_c_0 | Rep_3050_c_0_629 | 701280 | 702047 | + | 3.A.1.148.2 |
| NULL(UNKNOWN) | Rep_3050_c_0 | Rep_3050_c_0_630 | 702044 | 704449 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_3050_c_0 | Rep_3050_c_0_631 | 704540 | 704827 | + | Trans_reg_C |
| TC | Rep_3050_c_0 | Rep_3050_c_0_632 | 705031 | 706416 | - | 2.A.2.3.2 |
| CAZyme | Rep_3050_c_0 | Rep_3050_c_0_633 | 706446 | 709517 | - | GH2 |
Gene ID: Rep_3050_c_0_629
Type: TC
Location: 701280 - 702047 (+)
Type: TC
Location: 701280 - 702047 (+)
Gene ID: Rep_3050_c_0_630
Type:
Location: 702044 - 704449 (+)
Type:
Location: 702044 - 704449 (+)
Gene ID: Rep_3050_c_0_631
Type: TF
Location: 704540 - 704827 (+)
Type: TF
Location: 704540 - 704827 (+)
Gene ID: Rep_3050_c_0_632
Type: TC
Location: 705031 - 706416 (-)
Type: TC
Location: 705031 - 706416 (-)
Gene ID: Rep_3050_c_0_633
Type: CAZyme
Location: 706446 - 709517 (-)
Type: CAZyme
Location: 706446 - 709517 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp900539695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3050_c_0_633 | vegan > omnivore | 1.12323 | 0.00861 |