Cluster: Rep_3050_CGC41
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_3050
- CGC Family ID: CGCFAM_00990
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3050_c_3 | Rep_3050_c_3_142 | 151027 | 152781 | - | PL37 |
| CAZyme | Rep_3050_c_3 | Rep_3050_c_3_143 | 152785 | 154695 | - | GH154 |
| CAZyme | Rep_3050_c_3 | Rep_3050_c_3_144 | 154753 | 155895 | - | GH88 |
| TC | Rep_3050_c_3 | Rep_3050_c_3_145 | 155908 | 156807 | - | 3.A.1.1.10 |
| TC | Rep_3050_c_3 | Rep_3050_c_3_146 | 156820 | 157785 | - | 3.A.1.1.10 |
| TC | Rep_3050_c_3 | Rep_3050_c_3_147 | 157864 | 159507 | - | 3.A.1.1.10 |
| TF | Rep_3050_c_3 | Rep_3050_c_3_148 | 159851 | 162112 | - | HTH_AraC | HTH_AraC |
| CAZyme | Rep_3050_c_3 | Rep_3050_c_3_149 | 162150 | 164900 | - | GH3 |
Gene ID: Rep_3050_c_3_142
Type: CAZyme
Location: 151027 - 152781 (-)
Type: CAZyme
Location: 151027 - 152781 (-)
Gene ID: Rep_3050_c_3_143
Type: CAZyme
Location: 152785 - 154695 (-)
Type: CAZyme
Location: 152785 - 154695 (-)
Gene ID: Rep_3050_c_3_144
Type: CAZyme
Location: 154753 - 155895 (-)
Type: CAZyme
Location: 154753 - 155895 (-)
Gene ID: Rep_3050_c_3_145
Type: TC
Location: 155908 - 156807 (-)
Type: TC
Location: 155908 - 156807 (-)
Gene ID: Rep_3050_c_3_146
Type: TC
Location: 156820 - 157785 (-)
Type: TC
Location: 156820 - 157785 (-)
Gene ID: Rep_3050_c_3_147
Type: TC
Location: 157864 - 159507 (-)
Type: TC
Location: 157864 - 159507 (-)
Gene ID: Rep_3050_c_3_148
Type: TF
Location: 159851 - 162112 (-)
Type: TF
Location: 159851 - 162112 (-)
Gene ID: Rep_3050_c_3_149
Type: CAZyme
Location: 162150 - 164900 (-)
Type: CAZyme
Location: 162150 - 164900 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp900539695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3050_c_3_142 | vegetarian > omnivore | 3.07272 | 0.01557 |
| Rep_3050_c_3_142 | vegan > omnivore | 2.23633 | 0.00861 |
| Rep_3050_c_3_143 | vegan > omnivore | 2.11521 | 0.00861 |
| Rep_3050_c_3_143 | vegetarian > omnivore | 2.89253 | 0.01557 |
| Rep_3050_c_3_144 | vegan > omnivore | 1.89002 | 0.00861 |
| Rep_3050_c_3_144 | vegetarian > omnivore | 2.71616 | 0.01557 |
| Rep_3050_c_3_145 | vegan > omnivore | 2.66613 | 0.00861 |
| Rep_3050_c_3_145 | vegetarian > omnivore | 3.36885 | 0.01557 |
| Rep_3050_c_3_146 | vegetarian > omnivore | 3.28827 | 0.01557 |
| Rep_3050_c_3_146 | vegan > omnivore | 2.83649 | 0.00861 |
| Rep_3050_c_3_147 | vegetarian > omnivore | 2.74849 | 0.01557 |
| Rep_3050_c_3_147 | vegan > omnivore | 2.02893 | 0.00861 |
| Rep_3050_c_3_148 | vegetarian > omnivore | 2.94115 | 0.01557 |
| Rep_3050_c_3_148 | vegan > omnivore | 2.11694 | 0.00861 |
| Rep_3050_c_3_149 | vegetarian > omnivore | 1.41871 | 0.01557 |
| Rep_3050_c_3_149 | vegan > omnivore | 1.55863 | 0.00861 |