Cluster: Rep_3050_CGC20
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_3050
- CGC Family ID: CGCFAM_00055
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3050_c_1 | Rep_3050_c_1_610 | 703498 | 704565 | + | GT2 |
| CAZyme | Rep_3050_c_1 | Rep_3050_c_1_611 | 704596 | 705564 | + | GT2 |
| TC | Rep_3050_c_1 | Rep_3050_c_1_612 | 705577 | 706437 | + | 3.A.1.103.5 |
| TC | Rep_3050_c_1 | Rep_3050_c_1_613 | 706451 | 707728 | + | 3.A.1.103.5 |
| CAZyme | Rep_3050_c_1 | Rep_3050_c_1_614 | 707733 | 708575 | + | GT6 |
Gene ID: Rep_3050_c_1_610
Type: CAZyme
Location: 703498 - 704565 (+)
Type: CAZyme
Location: 703498 - 704565 (+)
Gene ID: Rep_3050_c_1_611
Type: CAZyme
Location: 704596 - 705564 (+)
Type: CAZyme
Location: 704596 - 705564 (+)
Gene ID: Rep_3050_c_1_612
Type: TC
Location: 705577 - 706437 (+)
Type: TC
Location: 705577 - 706437 (+)
Gene ID: Rep_3050_c_1_613
Type: TC
Location: 706451 - 707728 (+)
Type: TC
Location: 706451 - 707728 (+)
Gene ID: Rep_3050_c_1_614
Type: CAZyme
Location: 707733 - 708575 (+)
Type: CAZyme
Location: 707733 - 708575 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp900539695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.