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Cluster: Rep_3050_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3050_c_1 Rep_3050_c_1_817 919962 920879 + 3.A.1.1.28
TC Rep_3050_c_1 Rep_3050_c_1_818 920897 921763 + 3.A.1.1.34
pfam Rep_3050_c_1 Rep_3050_c_1_819 921768 922733 + Acetyltransf_1 | Acetyltransf_7
TC Rep_3050_c_1 Rep_3050_c_1_820 922730 924055 + 2.A.66.1.22
STP Rep_3050_c_1 Rep_3050_c_1_821 924267 925160 + SIS
CAZyme Rep_3050_c_1 Rep_3050_c_1_822 925160 926311 + GH171
CAZyme Rep_3050_c_1 Rep_3050_c_1_823 926324 927901 + GH3
CAZyme Rep_3050_c_1 Rep_3050_c_1_824 927901 928650 + CE1
Gene ID: Rep_3050_c_1_817
Type: TC
Location: 919962 - 920879 (+)
Gene ID: Rep_3050_c_1_818
Type: TC
Location: 920897 - 921763 (+)
Gene ID: Rep_3050_c_1_819
Type: pfam
Location: 921768 - 922733 (+)
Gene ID: Rep_3050_c_1_820
Type: TC
Location: 922730 - 924055 (+)
Gene ID: Rep_3050_c_1_821
Type: STP
Location: 924267 - 925160 (+)
Gene ID: Rep_3050_c_1_822
Type: CAZyme
Location: 925160 - 926311 (+)
Gene ID: Rep_3050_c_1_823
Type: CAZyme
Location: 926324 - 927901 (+)
Gene ID: Rep_3050_c_1_824
Type: CAZyme
Location: 927901 - 928650 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3050_c_1_818 vegetarian > omnivore 1.15303 0.01557
Rep_3050_c_1_824 vegetarian > omnivore 1.18265 0.01557

🧭 Explore Read Mapping of CGC

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