Cluster: Rep_3050_CGC35
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_3050
- CGC Family ID: CGCFAM_04431
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3050_c_1 | Rep_3050_c_1_1409 | 1568209 | 1570188 | - | GH31_7 |
| TC | Rep_3050_c_1 | Rep_3050_c_1_1410 | 1570195 | 1570968 | - | 3.A.1.1.34 |
| TC | Rep_3050_c_1 | Rep_3050_c_1_1411 | 1571048 | 1571968 | - | 3.A.1.1.11 |
| TC | Rep_3050_c_1 | Rep_3050_c_1_1412 | 1572030 | 1573358 | - | 3.A.1.1.7 |
| TF | Rep_3050_c_1 | Rep_3050_c_1_1413 | 1573493 | 1574524 | - | LacI |
| CAZyme | Rep_3050_c_1 | Rep_3050_c_1_1414 | 1574750 | 1576537 | + | GH125 |
| pfam | Rep_3050_c_1 | Rep_3050_c_1_1415 | 1576557 | 1576901 | + | Glyco_hydro_65N |
| CAZyme | Rep_3050_c_1 | Rep_3050_c_1_1416 | 1576939 | 1578696 | + | GH65 |
Gene ID: Rep_3050_c_1_1409
Type: CAZyme
Location: 1568209 - 1570188 (-)
Type: CAZyme
Location: 1568209 - 1570188 (-)
Gene ID: Rep_3050_c_1_1410
Type: TC
Location: 1570195 - 1570968 (-)
Type: TC
Location: 1570195 - 1570968 (-)
Gene ID: Rep_3050_c_1_1411
Type: TC
Location: 1571048 - 1571968 (-)
Type: TC
Location: 1571048 - 1571968 (-)
Gene ID: Rep_3050_c_1_1412
Type: TC
Location: 1572030 - 1573358 (-)
Type: TC
Location: 1572030 - 1573358 (-)
Gene ID: Rep_3050_c_1_1413
Type: TF
Location: 1573493 - 1574524 (-)
Type: TF
Location: 1573493 - 1574524 (-)
Gene ID: Rep_3050_c_1_1414
Type: CAZyme
Location: 1574750 - 1576537 (+)
Type: CAZyme
Location: 1574750 - 1576537 (+)
Gene ID: Rep_3050_c_1_1415
Type: pfam
Location: 1576557 - 1576901 (+)
Type: pfam
Location: 1576557 - 1576901 (+)
Gene ID: Rep_3050_c_1_1416
Type: CAZyme
Location: 1576939 - 1578696 (+)
Type: CAZyme
Location: 1576939 - 1578696 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp900539695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3050_c_1_1409 | vegan > omnivore | 1.25798 | 0.00861 |
| Rep_3050_c_1_1409 | vegetarian > omnivore | 1.49693 | 0.01557 |
| Rep_3050_c_1_1410 | vegan > omnivore | 1.71175 | 0.00861 |
| Rep_3050_c_1_1410 | vegetarian > omnivore | 1.88894 | 0.01557 |
| Rep_3050_c_1_1411 | vegan > omnivore | 1.54106 | 0.00861 |
| Rep_3050_c_1_1411 | vegetarian > omnivore | 1.97109 | 0.01557 |
| Rep_3050_c_1_1412 | vegan > omnivore | 1.25796 | 0.00861 |
| Rep_3050_c_1_1412 | vegetarian > omnivore | 1.81251 | 0.01557 |
| Rep_3050_c_1_1413 | vegan > omnivore | 1.55330 | 0.00861 |
| Rep_3050_c_1_1413 | vegetarian > omnivore | 2.02457 | 0.01557 |
| Rep_3050_c_1_1414 | vegan > omnivore | 1.62326 | 0.00861 |
| Rep_3050_c_1_1414 | vegetarian > omnivore | 1.82313 | 0.01557 |
| Rep_3050_c_1_1415 | vegan > omnivore | 1.83472 | 0.00861 |
| Rep_3050_c_1_1415 | vegetarian > omnivore | 1.92555 | 0.01557 |
| Rep_3050_c_1_1416 | vegan > omnivore | 2.13973 | 0.00861 |
| Rep_3050_c_1_1416 | vegetarian > omnivore | 2.41110 | 0.01557 |