Cluster: Rep_3050_CGC22
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_3050
- CGC Family ID: CGCFAM_00038
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3050_c_1 | Rep_3050_c_1_726 | 833386 | 834798 | + | 9.B.18.1.1 |
| CAZyme | Rep_3050_c_1 | Rep_3050_c_1_727 | 834832 | 835986 | + | GT4 |
| CAZyme | Rep_3050_c_1 | Rep_3050_c_1_728 | 835983 | 837044 | + | GT4 |
| NULL(UNKNOWN) | Rep_3050_c_1 | Rep_3050_c_1_729 | 837041 | 838300 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_3050_c_1 | Rep_3050_c_1_730 | 838354 | 840750 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_3050_c_1 | Rep_3050_c_1_731 | 840769 | 841713 | + | GT2 |
Gene ID: Rep_3050_c_1_726
Type: TC
Location: 833386 - 834798 (+)
Type: TC
Location: 833386 - 834798 (+)
Gene ID: Rep_3050_c_1_727
Type: CAZyme
Location: 834832 - 835986 (+)
Type: CAZyme
Location: 834832 - 835986 (+)
Gene ID: Rep_3050_c_1_728
Type: CAZyme
Location: 835983 - 837044 (+)
Type: CAZyme
Location: 835983 - 837044 (+)
Gene ID: Rep_3050_c_1_729
Type:
Location: 837041 - 838300 (+)
Type:
Location: 837041 - 838300 (+)
Gene ID: Rep_3050_c_1_730
Type:
Location: 838354 - 840750 (+)
Type:
Location: 838354 - 840750 (+)
Gene ID: Rep_3050_c_1_731
Type: CAZyme
Location: 840769 - 841713 (+)
Type: CAZyme
Location: 840769 - 841713 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp900539695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.