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Cluster: Rep_3050_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3050_c_1 Rep_3050_c_1_835 947475 949112 - GH13_31
NULL(UNKNOWN) Rep_3050_c_1 Rep_3050_c_1_836 949335 949556 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_3050_c_1 Rep_3050_c_1_837 949553 950506 + GT4
pfam Rep_3050_c_1 Rep_3050_c_1_838 950503 951087 + VTT_dom
CAZyme Rep_3050_c_1 Rep_3050_c_1_839 951093 952088 + GT4
TC Rep_3050_c_1 Rep_3050_c_1_840 952400 953764 + 3.A.1.1.45
TC Rep_3050_c_1 Rep_3050_c_1_841 953873 954724 + 3.A.1.1.45
TC Rep_3050_c_1 Rep_3050_c_1_842 954724 955572 + 3.A.1.1.45
CAZyme Rep_3050_c_1 Rep_3050_c_1_843 955619 957151 + GH77
pfam Rep_3050_c_1 Rep_3050_c_1_844 957287 957799 + Transpeptidase
TC Rep_3050_c_1 Rep_3050_c_1_845 957877 958584 + 3.A.1.122.7
TC Rep_3050_c_1 Rep_3050_c_1_846 958585 962451 + 3.A.1.137.2
TF Rep_3050_c_1 Rep_3050_c_1_847 962778 963305 + MarR
TC Rep_3050_c_1 Rep_3050_c_1_848 963299 965056 + 3.A.1.135.5
TC Rep_3050_c_1 Rep_3050_c_1_849 965056 966981 + 3.A.1.135.5
CAZyme Rep_3050_c_1 Rep_3050_c_1_850 967279 968178 + CBM13
pfam Rep_3050_c_1 Rep_3050_c_1_851 968299 971007 - tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1g | Val_tRNA-synt_C | tRNA-synt_1_2
pfam Rep_3050_c_1 Rep_3050_c_1_852 971445 971786 - ArsC
TC Rep_3050_c_1 Rep_3050_c_1_853 972146 973075 + 2.A.69.4.3
Gene ID: Rep_3050_c_1_835
Type: CAZyme
Location: 947475 - 949112 (-)
Gene ID: Rep_3050_c_1_836
Type:
Location: 949335 - 949556 (+)
Gene ID: Rep_3050_c_1_837
Type: CAZyme
Location: 949553 - 950506 (+)
Gene ID: Rep_3050_c_1_838
Type: pfam
Location: 950503 - 951087 (+)
Gene ID: Rep_3050_c_1_839
Type: CAZyme
Location: 951093 - 952088 (+)
Gene ID: Rep_3050_c_1_840
Type: TC
Location: 952400 - 953764 (+)
Gene ID: Rep_3050_c_1_841
Type: TC
Location: 953873 - 954724 (+)
Gene ID: Rep_3050_c_1_842
Type: TC
Location: 954724 - 955572 (+)
Gene ID: Rep_3050_c_1_843
Type: CAZyme
Location: 955619 - 957151 (+)
Gene ID: Rep_3050_c_1_844
Type: pfam
Location: 957287 - 957799 (+)
Gene ID: Rep_3050_c_1_845
Type: TC
Location: 957877 - 958584 (+)
Gene ID: Rep_3050_c_1_846
Type: TC
Location: 958585 - 962451 (+)
Gene ID: Rep_3050_c_1_847
Type: TF
Location: 962778 - 963305 (+)
Gene ID: Rep_3050_c_1_848
Type: TC
Location: 963299 - 965056 (+)
Gene ID: Rep_3050_c_1_849
Type: TC
Location: 965056 - 966981 (+)
Gene ID: Rep_3050_c_1_850
Type: CAZyme
Location: 967279 - 968178 (+)
Gene ID: Rep_3050_c_1_851
Type: pfam
Location: 968299 - 971007 (-)
Gene ID: Rep_3050_c_1_852
Type: pfam
Location: 971445 - 971786 (-)
Gene ID: Rep_3050_c_1_853
Type: TC
Location: 972146 - 973075 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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