Cluster: Rep_3050_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3050
- CGC Family ID: CGCFAM_00113
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3050_c_0 | Rep_3050_c_0_260 | 300552 | 301571 | + | GT2 |
| pfam | Rep_3050_c_0 | Rep_3050_c_0_261 | 301581 | 302231 | + | Hydrolase | HAD | Hydrolase_like | HAD_2 |
| TF | Rep_3050_c_0 | Rep_3050_c_0_262 | 302268 | 303152 | - | MerR |
| TC | Rep_3050_c_0 | Rep_3050_c_0_263 | 303233 | 304873 | - | 3.A.1.135.9 |
| TC | Rep_3050_c_0 | Rep_3050_c_0_264 | 304857 | 306599 | - | 3.A.1.106.9 |
Gene ID: Rep_3050_c_0_260
Type: CAZyme
Location: 300552 - 301571 (+)
Type: CAZyme
Location: 300552 - 301571 (+)
Gene ID: Rep_3050_c_0_261
Type: pfam
Location: 301581 - 302231 (+)
Type: pfam
Location: 301581 - 302231 (+)
Gene ID: Rep_3050_c_0_262
Type: TF
Location: 302268 - 303152 (-)
Type: TF
Location: 302268 - 303152 (-)
Gene ID: Rep_3050_c_0_263
Type: TC
Location: 303233 - 304873 (-)
Type: TC
Location: 303233 - 304873 (-)
Gene ID: Rep_3050_c_0_264
Type: TC
Location: 304857 - 306599 (-)
Type: TC
Location: 304857 - 306599 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp900539695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.