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Cluster: Rep_3050_CGC33

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3050_c_1 Rep_3050_c_1_1187 1338451 1339422 + 3.A.1.1.10
TC Rep_3050_c_1 Rep_3050_c_1_1188 1339441 1340406 + 3.A.1.1.29
pfam Rep_3050_c_1 Rep_3050_c_1_1189 1340553 1342046 + DUF3502
CAZyme Rep_3050_c_1 Rep_3050_c_1_1190 1342151 1343140 + GH130_2
CAZyme Rep_3050_c_1 Rep_3050_c_1_1191 1343289 1346390 + GH38
CAZyme Rep_3050_c_1 Rep_3050_c_1_1192 1346468 1348315 + GH20
pfam Rep_3050_c_1 Rep_3050_c_1_1193 1348319 1349596 + MFS_1
CAZyme Rep_3050_c_1 Rep_3050_c_1_1194 1349610 1350248 + GH3
CAZyme Rep_3050_c_1 Rep_3050_c_1_1195 1350266 1352209 + GH3
Gene ID: Rep_3050_c_1_1187
Type: TC
Location: 1338451 - 1339422 (+)
Gene ID: Rep_3050_c_1_1188
Type: TC
Location: 1339441 - 1340406 (+)
Gene ID: Rep_3050_c_1_1189
Type: pfam
Location: 1340553 - 1342046 (+)
Gene ID: Rep_3050_c_1_1190
Type: CAZyme
Location: 1342151 - 1343140 (+)
Gene ID: Rep_3050_c_1_1191
Type: CAZyme
Location: 1343289 - 1346390 (+)
Gene ID: Rep_3050_c_1_1192
Type: CAZyme
Location: 1346468 - 1348315 (+)
Gene ID: Rep_3050_c_1_1193
Type: pfam
Location: 1348319 - 1349596 (+)
Gene ID: Rep_3050_c_1_1194
Type: CAZyme
Location: 1349610 - 1350248 (+)
Gene ID: Rep_3050_c_1_1195
Type: CAZyme
Location: 1350266 - 1352209 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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