Cluster: Rep_3050_CGC7
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_3050
- CGC Family ID: CGCFAM_00007
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3050_c_0 | Rep_3050_c_0_361 | 418808 | 419548 | + | 9.B.198.1.4 |
| pfam | Rep_3050_c_0 | Rep_3050_c_0_362 | 419594 | 420844 | + | UDPG_MGDP_dh | NAD_Gly3P_dh_N | 3HCDH_N | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| CAZyme | Rep_3050_c_0 | Rep_3050_c_0_363 | 420863 | 422041 | + | GT4 |
| CAZyme | Rep_3050_c_0 | Rep_3050_c_0_364 | 422038 | 423132 | + | GT4 |
| pfam | Rep_3050_c_0 | Rep_3050_c_0_365 | 423125 | 424048 | + | ATPgrasp_TupA |
| CAZyme | Rep_3050_c_0 | Rep_3050_c_0_366 | 424079 | 425254 | + | GT4 |
Gene ID: Rep_3050_c_0_361
Type: TC
Location: 418808 - 419548 (+)
Type: TC
Location: 418808 - 419548 (+)
Gene ID: Rep_3050_c_0_362
Type: pfam
Location: 419594 - 420844 (+)
Type: pfam
Location: 419594 - 420844 (+)
Gene ID: Rep_3050_c_0_363
Type: CAZyme
Location: 420863 - 422041 (+)
Type: CAZyme
Location: 420863 - 422041 (+)
Gene ID: Rep_3050_c_0_364
Type: CAZyme
Location: 422038 - 423132 (+)
Type: CAZyme
Location: 422038 - 423132 (+)
Gene ID: Rep_3050_c_0_365
Type: pfam
Location: 423125 - 424048 (+)
Type: pfam
Location: 423125 - 424048 (+)
Gene ID: Rep_3050_c_0_366
Type: CAZyme
Location: 424079 - 425254 (+)
Type: CAZyme
Location: 424079 - 425254 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger sp900539695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.