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Cluster: Rep_3050_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3050_c_1 Rep_3050_c_1_806 901233 902456 + 2.A.1.11.3
TC Rep_3050_c_1 Rep_3050_c_1_807 902652 904007 + 2.A.66.1.33
TF Rep_3050_c_1 Rep_3050_c_1_808 904125 904832 + LytTR
pfam Rep_3050_c_1 Rep_3050_c_1_809 904832 906115 + HATPase_c_5
CAZyme Rep_3050_c_1 Rep_3050_c_1_810 906473 908392 + GH2
CAZyme Rep_3050_c_1 Rep_3050_c_1_811 908449 911448 + GH3
TC Rep_3050_c_1 Rep_3050_c_1_812 911531 913096 + 2.A.2.3.2
Gene ID: Rep_3050_c_1_806
Type: TC
Location: 901233 - 902456 (+)
Gene ID: Rep_3050_c_1_807
Type: TC
Location: 902652 - 904007 (+)
Gene ID: Rep_3050_c_1_808
Type: TF
Location: 904125 - 904832 (+)
Gene ID: Rep_3050_c_1_809
Type: pfam
Location: 904832 - 906115 (+)
Gene ID: Rep_3050_c_1_810
Type: CAZyme
Location: 906473 - 908392 (+)
Gene ID: Rep_3050_c_1_811
Type: CAZyme
Location: 908449 - 911448 (+)
Gene ID: Rep_3050_c_1_812
Type: TC
Location: 911531 - 913096 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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